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Microarray Analysis Setup is now available in the New Run dropdown menu.
BaseSpace command-line interface (CLI) version 1.5.0. Download or view detailed .
Custom fixed layout single index kits are now supported in the run setup tool.
Fixed an issue that caused the /v2/feeds endpoint to return an error.
Fixed an issue that could cause toolbar menu actions to stay disabled when on the Run master list.
Fixed missing "copy" icon on the Share By Link modal.
Added duplicate index sequence validation in sample tables when the kit is unspecified.
Fixed an error that could occur when downloading a reference genome from the Settings page.
Fixed an issue that would not display indexing QC metrics when a run completes.
Fixed an issue that could cause an app to abort while initializing.
Fixed an issue that could show duplicate files in the Run tab.
Added the % Reads Identified chart to the Indexing QC page.
The Account Overview settings page now displays subscription expiration date, subscription status, and iCredit balance.
Changed instrument-specific option label in New Run menu to "Instrument Run Setup".
Improved Instrument Run Setup user experience when importing a sample sheet with a defined Index Adapter Kit.
Fixed an issue with the default order of entries on the Demo Data page. Entries are now sorted chronologically with newer entries listed first.
Improved messaging for sample report generation failure.
Fixed an issue that caused the Upload Biosample Manifest modal to close when users click outside the modal.
Fixed an issue that disabled dataset links on the Run Biosamples page.
Fixed an issue that showed an empty Run Biosamples page for projects owned by another user.
Fixed an issue on the Run Metrics page where the table headers did not display after saving the metrics as a PDF.
Instrument Run Setup now supports generating NovaSeq sample sheets. (Staged rollout complete Oct 1 2021)
Released BCL Convert version 1.3.0. View the app and detailed release notes .
Released BaseSpace command-line interface (CLI) version 1.4.1. Download or view detailed .
Performance improvements and fixes.
Fixed an issue on the Biosample master list where the Biosample name was displayed in the Project column.
Fixed an issue in the Active runs list where the Transfer Ownership call to action remained enabled when that transfer was already pending.
Fixed an issue in Instrument Run Setup where the loading spinner disappears before the required APIs are loaded.
Features
Performance and stability improvements.
Bugs Fixed
Fixed an issue that could cause a resource to be stuck in the Archived state.
Fixed an issue that would incorrectly display an error message when copying a shared FASTQ dataset.
Numerous table columns on Run and Biosample pages can now be resized.
Fixed an issue that could cause an incorrect run selection when sorting a table after making selections.
Fixed an issue that prevented users from selecting and copying values within tables.
Fixed a display issue that prevented users from seeing all the content in certain modal windows.
Fixed an issue that could cause selected rows to appear unchecked after horizontally scrolling a table.
Separated the Biosample Datasets tab into two new tabs: FASTQs and Other Datasets.
Updated the look and feel of the Biosample Analyses tab.
Released BaseSpace command-line interface (CLI) version 1.4.0. Download here or view detailed release notes.
Fixed an issue that could redirect users to a 403 page when copying FASTQ Datasets into a shared project.
Fixed an issue that could cause the Biosample Details page to refresh when loading.
Features
Performance and stability improvements.
Updated the Jint javascript interpretation library from v0.9 to v3.0. For more information, view the App JavaScript FAQ.
Biosample yields now stop calculating when 50 or more distinct libraries are associated.
Instrument Run Setup now supports specifying duplicate indexes in separate lanes for multi-lane instruments.
Updated the user interface with the following changes:
Added a link to the Admin Console in the User menu for admin users.
Moved the link to My Illumina from the User menu to the waffle menu.
Improved reporting of JavaScript errors to app developers in the Developer Portal.
Fixed an issue where the Change Lane QC modal did not open.
Fixed a rare issue that could prevent sharing or transferring of Projects.
Fixed an issue that could prevent an appsession from being aborted after the 7 day limit.
Native App engine update - Staged roll out
Improved error handing and performance
Fixed an issue where FASTQ Generation and other apps could fail while uploading results.
Features
None.
Bugs Fixed
Fixed an issue that could cause apps to fail to launch.
Improved performance when moving large analyses to the trash.
Users can now review and accept the EULA when launching an analysis through Microarray Run Setup.
Fixed an issue that could cause an app input form error when specifying uneven pairs in a Biosample matcher.
V2 Sample Sheet runs that are in Needs Attention status now display error messages.
Improved messaging for sample sheet import errors in Instrument Run Setup.
Released BaseSpace command-line interface (CLI) version 1.3.0. or view release notes .
Fixed Manage Workgroups URL for Enterprise users.
Fixed an issue that would dismiss a shared invitation for a project while accepting the invitation for a different one.
Fixed an issue that could cause a FASTQ dataset to link to multiple libraries.
Performance improvements to the Run Charts page.
Added a link to analysis and storage pricing information in the Instrument Run Setup tool.
Share and transfer invites that are sent to an email address before the account is created now appear on their first login.
Added the option to share associated projects when sharing a run with other accounts.
Fixed an issue in the FormBuilder that prevented the display of section breaks.
Fixed an issue in the FormBuilder where FieldSet components ignored the "isOpen" field.
Fixed an issue that prevented the deletion of planned runs.
Fixed an issue where file preview modals were too small when previewing image files.
Fixed an issue that prevented a biosample from showing up in a chooser after marking its FASTQ dataset as QC Passed when the FASTQ dataset previously failed.
Fixed an issue on the Appsession Reports page that displayed a per-sample report by default, instead of the summary report.
Fixed an issue that allowed multiple clicks of the Accept button in share invitations.
Fixed an issue where the lock icon was missing on the summary page for biosamples with datasets from multiple sources.
Fixed Run and Biosample master list issues that prevented column selections from being saved.
Fixed an issue where the notification bell obscured the app name in lower display resolutions.
Fixed an issue where the Download option was enabled for runs in an Uploading state.
Features
Performance improvements.
Bugs Fixed
Fixed an issue where ICA-based apps would fail when launching through a biosample workflow.
Features
Performance and stability improvements.
Updated the look and feel of the Settings pages.
Improved behavior when creating a new Project in a Project Chooser modal. Creating a new Project automatically selects it and closes the modal.
Improved Project support when using the V2 Sample Sheet format. The optional ProjectName column is now used for Biosample Default Project and Output Project, when specified.
Fixed an issue that could prevent appsession logs from being displayed.
Fixed an issue on app input forms that caused the Add a New Row button to be invisible in Safari.
Fixed an issue on the Run Metrics tab where the Tbp unit was not being used for yield values above 1000 Gbp.
Fixed an issue that could cause an appsession encountering an error to get stuck in the initializing status instead of aborting.
Fixed an issue on the Run Metrics page where the cluster density standard deviation value was not adjusted to the same scale as the density value.
Features
Performance improvements.
Bugs Fixed
None.
The Run Sample Sheet tab now displays V2 sample sheet information.
Updated the look and feel of Run Chart and Biosample pages.
Added support for top-ups and requeues when automatically registering FASTQ data to ICA.
Fixed an issue that could cause runs to have a size of "0". As a result of this fix, some users may see an increase in their overall storage usage.
Fixed an issue that could cause share links to not work correctly.
Fixed an issue that caused incorrect requeue options to be enabled for some NextSeq instruments.
Fixed an issue where users were not redirected to the dashboard after deleting a shared run or a run they own from their account.
Fixed an issue where cluster density values were cut off on the Run Metrics tab.
Fixed a performance issue that could occur when using the Copy > FASTQ Dataset feature.
Fixed an issue that prevented users from returning to a workgroup context when logging back into BaseSpace Sequence Hub.
Fixed an issue on the Runs master list where long run names would block the run details tooltip.
Features
Performance improvements.
Bugs Fixed
None.
Fixed display issues that misaligned or cut off biosample metadata.
Fixed an issue that prevented custom library prep kits from being deleted.
Fixed an issue on Demo Data pages that would show a blank page when no search results are found.
Fixed an issue that hid timed out appsessions from the analysis master list.
Fixed an issue that prevented appsessions from timing out.