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Improved the requeue experience for better consistency across runs and sample sheet formats. For more details, see What's New.
Updated the BaseSpace CLI to version 1.6.1. Download the latest version and see the release notes here.
Updated the UI to use more of the available screen width on larger displays.
Simplified the menu option for unzipping. To unzip a Run, select File > Unzip.
Fixed an issue that could cause an analysis to abort when using a shared run as input.
Fixed an issue that could cause a project transfer to get stuck and prevent other actions.
Fixed an issue that prevented the developer tools from displaying in the developer portal form builder.
Fixed an issue where certain validations were not performed until after launching a requeue (eg, the run is transferring or in a non-terminal status). These validations are now performed after selecting the requeue option in the menu.
Fixed a typo in the Create Custom Library Prep Kit dialog.
Updated the look and feel of the Apps page.
Added a "Status" column in Analysis Files page to display archive status.
Updated the Project list page to make columns resizable.
Added the ability to cancel auto-launched or re-queued v2 sample sheet analyses.
Made improvements to the Microarray Data Management upload date range filter.
Added more detailed progress bar during Microarray Data Management data deletion process.
Added column filter for Run Planning Sample table.
Added the ability to view and edit custom kits in the Resources > Index Adapter Kits page.
Fixed an issue that could cause analyses to get stuck in the Initializing status.
Fixed an issue that made Indexing QC information unavailable for multi-node FASTQ Generation analyses.
Fixed an issue where the cancel button was still enabled while deleting microarray data.
Fixed issue in Microarray Analysis Setup where any click in the custom filter dropdown would reset the position of the dropdown on scroll/resize.
Fixed an issue in Microarray Analysis Setup where importing too many IDATs resulted in samples not appearing ready for analysis.
Fixed an issue in the Microarray Data Management table where dates remained visible in the calendar view after clearing filter.
Fixed a typo in the Archive and Restore dialogue boxes.
Fixed an issue that prevented the number on the trash icon from updating when switching workgroups.
Prep functionality is being deprecated. Starting in January 2025, the Prep tab will no longer be available. Most users have already upgraded to use Run Planning. It is recommended any legacy NextSeq and MiniSeq users update to the latest software releases for their platform.
Archive is now available for all runs and datasets, including data from NovaSeqX and NovaSeqXPlus instruments.
ICA analysis logs have been moved to a dataset called "ICA Logs", to make them easier to find in the Analysis Files UI.
Added the ability to requeue a Run from the Run list.
Fixed an issue that prevented the index cycles from displaying on the Run Summary tab before the upload completed.
Fixed an issue that could cause a run with a bad sample sheet to get stuck in 'Pending Analysis' rather than moving to 'Needs Attention'.
Fixed an issue that allowed a run to be transferred before the upload completes.
Fixed an issue that could prevent the Run Indexing QC tab from displaying properly.
Fixed an issue that could send duplicate "run created" emails when starting a sequencing run.
Updated the Analysis Files tab to include a project column with the associated output project.
Runs will now transition to the "Timed Out" status if they have not completed 14 days after upload starts, or 8 days after secondary analysis starts.
Reordered the items in the Status > Requeue menu.
Deprecated NeoPrep functionality.
Minor UI updates and fixes.
Fixed an issue that could prevent the sample sheet from loading on the Requeue Sample Sheet page when a custom sample sheet name was used.
Fixed an issue that could prevent requeueing runs that were uploaded without an initial sample sheet.
Fixed an issue where BCL Convert 2.5.0 was not updating the run status upon completion.
Fixed an issue that prevented unzipping a zipped run when the run folder contained a Logs.zip file.
Features
None.
Bugs Fixed
Fixed an issue that could cause the Analysis Reports tab to display a blank space instead of a report.
Stability and performance improvements.
Improved look and feel on the dashboard, runs spotlight section, navbar, and toolbar menus.
Updated the toolbar icons.
Added the option to switch to the correct Workgroup when following a Project or Analysis link.
Added the application category "Infectious Disease + Microbiology".
Added an analysis description in Microarray Analysis Setup that displays after selecting an analysis.
Updated the dropdown lists in Microarray Analysis Setup to sort alphabetically.
Fixed an issue that could prevent Run size from updating during upload.
Fixed an incorrect validation for the Override Cycles field in Run Planning that prevents user from setting up a run with Index1 as UMI and Index2 for demultiplexing.
Fixed an issue in Run Planning that occurred when importing a NextSeq1000/2000 planned run from a sample sheet that does not contain an OverrideCycles value.
Fixed an issue in Microarray Analysis Setup where a "Failed to import idats" message remained after re-importing valid files.
Fixed an issue in Microarray Analysis Setup where uploading an invalid Product Descriptor file would cause the Add Custom Configuration modal to hang.
Added the ability to delete custom library prep kits and index adapter kits from the Resources page.
Fixed an issue that prevented the transfer of projects containing NextSeq 1000/2000 and BCL Convert analysis data. Staged Rollout.
Fixed an issue that could cause a NovaSeq X Local mode run to be incorrectly stuck in the Uploading status.
Fixed an issue when transferring Projects that could prevent associated Biosamples from showing up for the recipient.
Fixed a rare issue where an App launch could result in two analyses.
Features
None.
Bugs Fixed
A new version of the BaseSpace Downloader for Windows has been made available, that fixes network connection issues experienced by some users. A security warning about untrusted software may be shown during installation.
Added the ability to transfer Projects containing autolaunched NovaSeq X analysis data and output from ICA pipeline-based apps (staged rollout complete February 29 2024).
Updated the Microarray Analysis Setup ‘Import SampleSheet’ function to allow for additional columns in sample sheet.
A new version of the BaseSpace Downloader for Windows has been made available, that fixes network connection issues experienced by some users. Users will be prompted to upgrade to the new vesion (2.2.8.0) when they next launch the Windows downloader.
Fixed an issue that could prevent a Run's status from updating when an associated analysis times out.
Fixed an issue that could occur when launching apps from FASTQs generated by BCL Convert or NextSeq1000/2000 autolaunch.
Fixed an issue that caused the Requeue > Planned Run menu option to be enabled for shared Runs.
Fixed an issue that caused ICA pipelines to fail when launched with a biosample with no default project.
Fixed an issue in Microarray Analysis Setup where the page is not reset after changing the workgroup context.
Fixed an issue in Microarray Analysis Setup that causes the Load Samples modal to remain open after importing duplicate idats.
Updated the BaseSpace CLI to version 1.6.0. Download the lastest version and see the release notes .
Minor UI updates to the action toolbar dropdown menus.
Security improvements and fixes.
Fixed an issue that prevented screenshots from displaying correctly on Application details pages.
Fixed an issue that prevented PDFs from displaying properly when previewing from a file browser.
Fixed an issue that could cause a loading spinner to display indefinitely after sharing or unsharing a run.
Fixed an issue that could cause an error message to incorrectly display when accepting a run share via share link.
Fixed an issue that displayed the owner, not the collaborator, in the share acceptance email.
Fixed an issue that caused items in the File > Upload menu to display in uppercase.
June 25, 2024: Fixed an issue introduced in May 2024 that prevented iScan data from successfully being sent to cloud in ICA integrated mode.
Added the ability to filter the Analysis list page by Application.
Added resizing for the following columns in the Analysis list:
Name
Application
Project
Added the ability to define a custom product when creating a custom configuration in Microarray Analysis Setup.
Stability fixes.
Fixed an issue so the Dashboard 'Recent Activity' section only shows Runs and Analyses owned by the current user or workgroup.
Fixed an issue that could cause an incorrect error message to display on subsequent attempts to move an object to the trash.
Fixed an issue that caused a mismatch between the Analysis list 'Last Modified' timestamp and the Analysis details 'Date Completed' timestamp.
Fixed an issue that could cause analysis logs to display a FASTQ-related message even when no FASTQs were generated.
Added analysis autolaunch support for NovaSeq X manual mode runs with a sample sheet.
Added the option to switch to the correct Workgroup when following a Biosample link.
Minor UI updates and fixes.
Fixed an issue that could cause an incorrect version of native FASTQ Generation to be launched on run upload.
Fixed an issue that could cause an analysis to continue running after moving the project to the trash.
Fixed an issue that could cause a requeue with a new sample sheet to fail.
Fixed an issue that could prevent scrolling after switching workgroups.
Fixed an issue with the Archive Restore modal where the "Restore Data" button stayed enabled when an error occurred.
Fixed an issue in Run Planning where reference files were not being included when exporting a local run with the DRAGEN v4.2.7 apps.
Fixed an issue in Microarray Analysis Setup where sample sheet import would fail with too many samples.
Features
None.
Bugs Fixed
Fixed an issue that affected sharing, transferring, and downloading of NovaSeq X and NextSeq 1000/2000 runs and analysis data.
Fixed an issue that prevented re-queue of NovaSeqX runs by the new owner after a run was transferred.
Improved behavior when retrieving account subscriptions.