Available only for indexed runs, the Indexing QC page provides indexing QC results for the run. View unexpected results for a sample, or confirm that all indexed samples are properly represented.
The first section contains a table that summarizes the indexing performance for the selected lane.
Total Reads: Total number of reads.
PF Reads: Total number of clusters passing filter.
% Reads Identified (PF): Percentage of clusters passing filter that are assigned to an index.
% Reads Undetermined: Percentage of clusters passing filter that could not be assigned to an index.
CV: Coefficient of variation for the number of counts across all indexes.
Min: Lowest representation for any index.
Max: Highest representation for any index.
The graph displays the % Reads Identified (PF) Per Index for the selected lane.
The second section shows % Reads Identified (PF) Per Index in the Per Index table.
Index: A unique number BaseSpace Sequence Hub assigns to each index for display purposes.
Sample ID: The sample ID assigned to an index in the sample sheet.
Library Name: The library assigned to an index in the sample sheet.
Index 1 (i7): The sequence for the first index read.
Index 2 (i5): The sequence for the second index read.
% Reads Identified (PF): Percentage of clusters passing filter that are assigned to the index.