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Improved allocation of compute resources leading to decreased app startup times.
Improved performance of the 'get project' CLI command when filtering on project name.
Fixed an issue in Run Planning where white space before or after the Run Name could cause a validation error on the instrument.
Run Planning:
Renamed "Instrument Run Setup" to "Run Planning" in the New Run dropdown menu.
Run planning now consists of three stages: run settings, analysis configurations, and run review.
Added a "Save as Draft" option when planning a run. Draft runs are available through Sequence Hub but not on instruments. Once a draft is saved as Planned, it is available on supported instruments.
Improved the ability to import samples from a CSV file. A template CSV is provided for download, and v2 Sample Sheets can still be used to import samples.
Added multi-selection support for the Lane column in the Sample table.
Added new optional fields under run settings: Run Description and Library Tube ID.
Note that there is no change to saved data. Planned runs created using the previous version can still be viewed in Run Planning.
Removed product filter from Beadchip selection table in the Microarray Analysis Setup tool
Improved error messages when launching an app with the API or CLI and no valid FASTQ files are found.
Improved performance when retrieving biosamples in preptab.
Fixed an issue that could cause the email notification checkboxes in Settings to be unchecked even when turned on.
Added initial support for integration with Illumina Connected Analytics (ICA), via a new app, BCL Convert for ICA Beta. This version exposes the generated FASTQ files and Samples within ICA.
Fixed an issue that could cause the "Change FASTQ QC Status" dialog to load slowly.
FASTQ Generation and other apps very infrequently abort while uploading results.
For customers using Instrument Run Set up to create a v2 sample sheet for a NovaSeq SP 500 cycle run, the sample sheet produced has the I5 index sequence in the incorrect orientation. This assigns all sample reads to undetermined. To correct the issue, we recommend removing the "IndexOrientation Forward" flag from the [Header] section of the sample sheet.
Improved performance of biosample creation following the completion of run upload.
Improved performance of QC failing existing FASTQ datasets when re-running BCL Convert.
Added support for updating the default project on biosamples generated by the BCL Convert for ICA app.
Added support for renaming biosamples generated by the BCL Convert for ICA app.
Fixed an issue that could cause BCL Convert to fail when retrieving the number of flow cell lanes.
Fixed an issue that caused deleted FASTQ datasets to remain visible on the Run Biosamples page.
Fixed an issue that could cause apps to fail when selecting large numbers of datasets as input.
Features
None.
Bugs Fixed
Performance and stability fixes.
Features
None.
Bugs Fixed
Security fixes.
Improved the performance and stability of the datasets API.
Native App engine update - Staged roll out.
Improved error handing and performance.
Fixed an issue where FASTQ Generation and other apps could fail while uploading results.
Fixed an issue that could cause an error when using the CLI to launch an application with a multi-select field.
Fixed an issue in the library prep kit TSV template where the Adapter Read 2 value was not imported correctly.
Improved performance of app launch when using more than three Biosamples. Certain validations will now be performed during initialization and any errors will be displayed in the analysis log.
Improved performance of the v2/datasets API.
Fixed an issue that prevented unlocking a Biosample using the status menu.
Fixed a rare issue that could affect datasets from multi-project analyses when one of the projects is deleted.
Fixed an issue causing the action buttons on the Biosample matcher modal to run off screen.
Fixed a UI issue where selecting an item would sometimes not change the context of the action menu.
Occasional delays in search indexing can result in Biosamples not appearing immediately after creation.
Features
None.
Bugs Fixed
Fixed an issue that affected certain apps when launching them using the BSSH CLI.
Fixed an issue that caused slow loading of available Biosamples in Prep Tab.
Features
None.
Bugs Fixed
Performance and stability fixes.
Fixed an issue that could cause slow app launches when using the CLI or API, occasionally leading to timeouts.
Added support for NovaSeqX and NovaSeqX Plus instrument types.
Fixed an issue that could prevent biosample yield from appearing after BCL Convert completes.
Fixed an issue that could cause analyses to hang in the "Running" state.
Fixed an issue that could cause restoration of archived files to fail.
When creating a custom kit during run planning, the newly created prep kit will now be auto-selected.
Features
None.
Bugs Fixed
Fixed an issue that could prevent analyses from transitioning to the 'Complete' state.
Fixed an issue that could prevent linking of FASTQ Datasets upon completion of DRAGEN FASTQ Toolkit.
Added support for Illumina Connected Analytics (ICA v2) integration. Staged rollout.
Fixed an issue in Microarray Analysis Setup where previously entered values were not cleared when switching user context.
Increased reliability of automated customer e-mails.
Bugs Fixed
Improved stability of ICA integration across regions.
Bugs Fixed
Updated the Native App Engine to fix an issue where interrupted system calls can produce errors in FASTQ Generation.
Known Issues
FASTQ Generation and other apps very infrequently abort while uploading results.
Projects, datasets, and analyses with files stored in ICA can now be moved to the trash and deleted.
Fixed an issue with the Instrument Run Setup tool, where the Lane column was incorrectly validated when using “Not Specified” for library prep kit.
Fixed an issue that could incorrectly set the size of an Analysis to 0.
Fixed an issue on the Run Sample Sheet tab where Date field values were incorrectly formatted.
FASTQ Generation and other apps very infrequently abort while uploading results.
For customers using Instrument Run Set up to create a v2 sample sheet for a NovaSeq SP 500 cycle run, the sample sheet produced has the I5 index sequence in the incorrect orientation. This assigns all sample reads to undetermined. To correct the issue, we recommend removing the "IndexOrientation Forward" flag from the [Header] section of the sample sheet.
Bugs Fixed
Fixed an issue in the application editing page used by administrators.
Performance and Security Improvements.
Reduced the time to abort analyses to 6 hours in cases where the post-processing step gets stuck. This change only affects a subset of BSSH apps.
Improved messaging when a user tries to trash an appsession within a shared project that the current user does not own. The message now will indicate that the individual shared resource cannot be deleted and advise the user to delete the entire shared project. If the user deletes the project, and are not the owner, the project will be unshared but remain in the owner's account.
Fixed a rare issue where apps occasionally aborted with the message "Input JSON file not found." Any apps that previously aborted with this message will now proceed to completion without any additional user intervention.
Fixed an issue that could prevent trashing analyses with a large number of datasets.
Fixed issue that could cause moving appsessions with long names to the trash to fail.
Fixed an issue where the share/transfer acceptance modal displayed workgroups from other regions.
Improved performance when post-processing analysis results from certain apps.
Added support for custom configuration files in the Microarray Analysis Setup tool.
Fixed an issue that could cause an extra 30-day over-limit auto-deletion email to be sent when an account is eligible for deletion.
Fixed an issue on the Run Biosamples tab where the FASTQ Dataset link routed to the Biosample Other Datasets tab.
Fixed an issue that could cause a bad URL to route to an "unexpected issue" page instead of a 404 page.