November 10, 2020 - 6.3 - Notification Menu

Features

• Added a notification menu for non-spotlight notifications.

• Added % Loading Concentration metric.

• Added support for TSV format for custom index adapter kits created in Instrument Run Setup.

• Added On Hold status for biosamples.

• Added biosample status changes to audit logs.

Bugs Fixed

• Fixed an issue where the TotalCount field of the appsession API endpoint returned an incorrect value.

• Fixed an issue that prevented the preferred version to be set for some applications.

• Fixed an issue that could cause pop-up modals to run off the page.

Release 6.3.1 - November 16, 2020

• Features

• Performance improvements.

• Bugs Fixed

December 15, 2020 - 6.4 - Per-sample Analysis Settings

Features

• Added support for per-sample settings in the Run Setup tool to configure analysis settings for individual samples.

• In the Run Setup tool, the FASTQ Generation analysis type is now named BCL Convert.

• Improved support for detecting errors in V2 Sample Sheets. Critical errors now transition the run to Needs Attention status.

• Performance improvements to BCL Convert integration for NextSeq 1000 & NextSeq 2000 systems.

Bugs Fixed

• Fixed an issue where index and library kits were changed to unspecified kits when editing a planned run in the Run Setup tool.

• Fixed an issue with Run Setup tool where analysis settings were not refreshed after changing analysis type.

• Fixed run setup to remove leading or trailing spaces in run name, sample ID, index, or free-text fields in the Run Setup and Analysis Setup pages.

September 15, 2020 - 6.1 - Archival Storage

Archival Storage Feature

Archival storage is being rolled out to users over the next few weeks. This feature allows accounts configured for New application mode to transfer runs and datasets to long-term storage, with significantly lower costs than standard storage. Data transfer takes several days to complete and incurs additional fees. Restoring data that have been archived for a short period of time can result in higher overall storage cost, so archiving is not recommended for data that you intend to use in the next several months.

Other Features

• Added iCredit balance and subscription status to the account settings page.

• Added promotional iCredit balance to the banner notification in Free Trial accounts.

Bugs Fixed

• Create new project option not enabled on the Prep tab page for creating a biological sample.

• Error when downloading files or sharing data in Enterprise domain accounts.

• Incorrect items listed in the Status menu.

Release 6.1.1 - September 16, 2020

• Features

  • None.

• Bugs Fixed

Release 6.1.2 - September 18, 2020

• Features

  • None.

• Bugs Fixed

January 23, 2020 - 5.42 - Biosample rename and gzip upload support

Features

• The UI file uploader now supports gVCF and gzipped VCF files.

• The app input form now displays a notice if a newer version of the app exists.

• The owner of a biosample can edit the biosample name. To rename the biosample, select the File menu, point to Edit and then select Biosample Info.

Bug Fixes

• Fixed the status field requirement in the POST /v2/libraries/{id} endpoint. The status field is now optional instead of required.

March 3, 2020 - 5.43 - NextSeq 1000/2000 Instrument Run Setup

Features

• Prep tab is renamed to Run Planning and includes two menu options: Instrument Run Setup (supporting NextSeq 1000 and NextSeq 2000 systems) and the original Prep page for other systems.

• Changed billing options for third-party apps. Billing is disabled for new apps and pricing for existing apps cannot be changed.

• Increased the number of supported characters for adapter sequences to 128.

Bug Fixes

• Fixed an issue that would cause an error when a custom name was used for a sample sheet.

• Fixed an issue in the Move Runs to Trash dialog that allowed more than one option to be selected.

• Fixed an issue where long app names were shortened in the header of app input forms.

Release 5.43.1 - March 4, 2020

• Features

  • None.

• Bug Fixes

Release 5.43.2 - March 18, 2020

• Features

  • None.

• Bug Fixes

Release 5.43.3 - March 23, 2020

• Features

  • None.

• Bug Fixes

• 6.4.0

• 6.3.0

• 6.2.0

March 31, 2020 - 5.44 - Improvements in Instrument Run Setup

Features

• Added a default Select option to drop-down menus in the Analysis Setup page for Instrument Run Setup. This option can be used to clear an unwanted menu selection.

Bug Fixes

• Improved Prep tab error messages for duplicate sample names in imported library templates.

• Fixed an issue that prevented display of Indexing QC if a run did not have Indexing QC data for the first lane.

• Fixed an issue where reports generated from multi-node app sessions did not display until the page was refreshed.

Release 5.44.1 - April 8, 2020

• Features

  • Updated the support team contact information in the "Activate Subscription" dialog box.

• Bug Fixes

Release 5.44.2 - April 11, 2020

• Features

  • None.

• Bug Fixes

Release 5.44.3 - April 20, 2020

• Features

  • None.

• Bug Fixes

Release 5.44.4 - April 23, 2020

• Features

  • None.

• Bug Fixes

May 19, 2020 - 5.45 - Files & Kits Settings Pages

Features

• Added Files & Kits menu to the Settings page, where the following run setup resources can be viewed or added:

  • Library prep kits

  • Index adapter kits

  • Reference genomes

• When running a NextSeq 2000 in Local Analysis mode, uploaded analysis results are stored in a project. If a project does not exist, a new project is created.

• Improvements to Run Setup:

  • Added support for large file upload.

  • Added confirmation prompt when switching Analysis Type or Analysis Location.

Bug Fixes

• Fixed an issue that caused the My Data and Run Planning navbar links to briefly duplicate on page load.

• Fixed an issue with multi-node appsessions where the report did not display until the page refreshed.

• Fixed an issue with the dataset matcher that prevented tooltips from displaying.

Release 5.45.1 - May 28, 2020

• Features

  • None.

• Bug Fixes

June 24, 2020 - 5.46 - NextSeq 2000 Cloud Analysis Improvements

Features

• Improved integration of cloud-based analysis for NextSeq 2000 systems.

Bug Fixes

• Fixed an issue that could cause an empty red banner to display for Basic user accounts that are near or over the storage limit.

Release 5.46.1 - July 16, 2020

• Features

  • Increased the number of files displayed in the Analyses page file browser to 2,048.

• Bug Fixes

Release 5.46.2 - July 17, 2020

• Features

  • None.

• Bug Fixes

August 11, 2020 - 6.0 - BaseSpace Sequence Hub 6.0

Features

• Version 6.0.0 implements a new look, aligned to the latest instrument design, and improvements to page loading speeds.

  • Dashboard spotlight displays items that require attention.

  • Run insights to track run metrics over time. View charts on the dashboard and export data to a CSV file. (Staged roll out completed August 12)

Bug Fixes

• Fixed an issue that could cause a subscription renewal account banner to appear after a Professional subscription account is renewed.

Release 6.0.1 - August 12, 2020

• Features

  • Added a link on the Apps page to the Developer Portal.

• Bug Fixes

Release 6.0.2 - August 20, 2020

• Features

  • Error messages from backend validation will be displayed for each field in the run setup page.

  • Dashboard includes a banner with free trial expiration date.

October 13, 2020 - 6.2 - Instrument Run Setup Enhancements

Features

• Added the selected analysis name and version to the Analysis Setup section of Instrument Run Setup

• Added description of selected library prep and index adapter kits below each field in Instrument Run Setup.

• Increased the character limit for project names to 255.

Bugs Fixed

• Fixed an issue on the Run list that could cause a blank popup to appear when filtering a column.

• Fixed an issue that could cause users to revert to the personal context while in a workgroup.

• Fixed an issue that caused the delete menu option to be disabled for shared runs.