> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/basespace/manage-data/download/download-analysis-files.md).

# Download Analysis Files

Use the BaseSpace Downloader to download a package of analysis files.

1. Select one or more analyses from the analysis list, or navigate to an analysis details page.
2. Select the File icon, point to Download, then select Analysis.
3. Select the file type you want to download:

* All files including VCF, BAM, & FASTQ
* VCF files only
* BAM files only

4. Select Download.

The BaseSpace Downloader guides you through the download process, and starts the download of the files to the desired location.


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