> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/basespace/releases/previous-releases/2025/7.39.0.md).

# 7.39.0 - BaseSpace Downloader 3.0

#### October 21, 2025

#### Features

* Updated the BaseSpace Downloader to version 3.0. For more details, see [What's New](/basespace/overview/whats-new.md).
* Added the 'DRAGEN Server' analysis location in Run Planning. Use this option to export the sample sheet to analyze sequencing data on a standalone DRAGEN server.
* Manual mode runs from NovaSeq X and MiSeq i100 instruments without a sample sheet will now transition to 'complete' following upload. Previously these runs were marked as 'needs attention'.
* Improved performance when loading the Microarray Analysis Setup tool.

#### Bugs Fixed

* Fixed an issue that could cause a "Separator must begin with the + sign" error when uploading a FASTQ file.
* Fixed an issue that could cause a run or project transfer to become stuck.
* Fixed an issue with the Analysis file browser that could cause files to display under the incorrect folder.
* Fixed an issue that could cause a run status to stay 'Pending Analysis' after analysis aborts.
* Fixed an issue in Microarray Analysis Setup where file upload was silently failing.
* Fixed an issue in the Analysis list page Application filter that showed duplicated application names.
* Fixed the Application filter in the Analysis list page to include the ICA Workflow Session Tracking app.
* Fixed an issue when launching an analysis from the CLI where the default analysis name is not generated correctly.

#### Known Issues

* The copy and merge features are currently unavailable for samples generated by BCL Convert.


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