Fixed an issue that could cause the list of available workgroups to load slowly.
Performance Improvements.
Added the Illumina FASTQ File Upload Requirements help page link to the error message that appears when a user uploads a FASTQ file with an invalid naming convention.
Updated the Prep tab Biological Samples import page to include information about using library import when adding prepared libraries or samples with assigned indexes.
Bugs Fixed
Fixed an issue that could prevent app launch when using biosamples from an Illumina Public Data shared project.
Added error messaging that displays when a file download attempt is made on an unsupported system.
Fixed an issue that could cause automatically launched workflows to immediately abort.
Fixed a formatting issue for long run names in the run master list run tooltip.
Fixed a formatting issue on analysis status tooltips.
The file uploader now supports up to 250 GB in a single session. However, for large files, the BaseSpace command-line interface (CLI) offers significantly faster upload times.
Performance Improvements.
Bugs Fixed
Fixed an issue with empty biosamples not appearing in search results. Biosamples that have no data (no FASTQ data sets or all data sets are QC-failed) now appear in global search results.
Fixed an issue where links to deleted runs were not automatically removed from the Runs tab list.
Fixed an issue where the Yield calculation on the Run Summary tab was displaying the wrong unit of measure.
Fixed an issue where the analysis Inputs tab did not automatically refresh after an analysis was completed.
Fixed the default filters on the biosample chooser. When an app is launched from a project page, the available biosamples list is automatically filtered to show only biosamples from that project.
March 12, 2019 - 5.32 - UI Improvements and Bug Fixes
Features
Updated the appearance of the Run Sample Sheet page.
Bugs Fixed
Fixed missing Project links on Analysis pages.
Fixed an issue that could cause newly created project files to be unavailable for download.
Recomputed yield on old samples to enable selecting them as application input.
5.36.0
July 9, 2019 - 5.36 - New Ways to Access Datasets
Features
Added FASTQ Datasets and Other Datasets tabs to the projects page. Other Datasets includes uploaded files, and app files that are not part of a biosample.
Added Run and Flow Cell ID data to the biosample dataset tooltips.
Added banner notifications for expiring or expired subscriptions.
Updated the share link deactivation confirmation to include information about managing user access after the link is deactivated.
Adjusted the display of base pair numbers. When the number of base pairs exceeds 1000 Gbp, the scale is adjusted to display in Tbp.
Bug Fixes
Fixed an issue where FASTQ validation continued after a file upload was cancelled.
Fixed an issue that allowed setting a library's prep kit to a deleted kit
Fixed an issue where uploading runs from both sides of a HiSeq flow cell could cause duplication of the project name.
Security Fixes
Release 5.36.1 - July 22, 2019
Features
Updated docker.illumina.com to support Enterprise apps (staged release complete 2019-08-06).
Performance improvements.
Bugs Fixed
None.
5.31.0
February 6, 2019 - 5.31 - Improvements to App Launch
Features
Improved launch of apps with up to 384 samples to avoid a time-out.
Workgroup administrators can now manage workgroups.
Bugs Fixed
When uploading a VCF with a file name that exceeds the character limit, the error message now indicates that the filename is too long.
Uploading files to the website over a slow internet connection no longer causes a time-out.
Release 5.31.1 - February 8, 2019
Features
Performance improvements.
Bugs Fixed
Release 5.31.2 - February 11, 2019
Features
Expected yield is now only calculated for biosamples with 32 datasets or less. For biosamples with more than 32 datasets, expected yield will equal the actual yield.
Bugs Fixed
Release 5.31.4 - February 26, 2019
Features
Performance improvements.
Bugs Fixed
Release 5.31.5 - March 6, 2019
Features
None.
Bugs Fixed
None.
Fixed an issue that could cause discarded fastq datasets to be submitted when launching apps with biosample inputs. Staged roll out completed Feb 12.
Fixed an issue that caused some apps get stuck in the "Payment Pending" state.
Fixed an issue where users were taken to an Unexpected Issue page when launching certain apps.
Fixed an issue in New mode that could cause apps to launch with incomplete FASTQ datasets.
5.33.0
April 2, 2019 - 5.33 - Performance Improvements
Features
Performance Improvements.
Bugs Fixed
Added error messaging that displays when a file download attempt is made on an unsupported system.
5.30.0
January 24, 2019 - 5.30 - NovaSeq SP Charts
Features
Updated the Charts tab to support NovaSeq SP runs.
Improved display of Biosample details and File Upload pages.
Added the project name to HTML title for the Project page.
Bugs Fixed
Biosamples created in multi-node FASTQ Generation were missing from the Run Samples tab in Classic mode. The biosamples are now listed in both New and Classic modes.
Improved detail for some file upload error messages.
Some successful file uploads briefly displayed an error message in Firefox browsers.
Cluster count values were displayed incorrectly in the Run Master List popup. The correct values are now displayed.
Security improvements in the developer portal.
Release 5.30.1 - January 30, 2019
Bugs Fixed
Fixed a slow loading issue on Analysis results pages.
Fixed an issue where an incorrect ID was returned for analyses launched via v2 API and CLI.
Fixed an issue where the View Files link for logs for some analyses did not appear on the Analysis summary tab.
5.39.0
October 17, 2019 - 5.39 - Improved performance of FASTQ file importing
Features
Improved performance of FASTQ file importing via web upload.
Bug Fixes
Fixed an issue that allowed projects with outstanding transfer invitations to be moved to the trash.
Fixed an issue where Run Name and Flow Cell ID did not appear in FASTQ Dataset tab tooltip.
Release 5.39.1 - October 28, 2019
Features
None.
Bug Fixes
Fixed an issue where the dashboard link to the developer portal did not display for Enterprise users.
Fixed an issue where bookmarked apps might not appear in the bookmark widget.
Fixed an issue that caused long workgroup lists to load slowly.
Fixed an issue that could cause the workgroup list to hang indefinitely.
5.40.0
November 19, 2019 - 5.40 - Run Name Editing
Important: Account Data Deletion
We are turning on data deletion for inactive free accounts that have not logged in for 180 days or more.
The system will send email notifications to inactive accounts warning them, and users have 30 days to reactivate their accounts by logging in.
Features
Enabled editing run names from either the run details page or the run master list (File | Edit | Run Info).
Renamed thePending Execution status to Queued for Analysis, and clarified the status tooltip description on the analysis master page.
Bug Fixes
Fixed an issue that allowed share recipients to update the status of a run.
We now are calculating project storage size based on Datasets instead of Samples and Appresults, this should be more accurate but may result in changes for some users. Staged roll out, estimated completion is 1/1/2020.
Release 5.40.1 - November 26, 2019
Features
None.
Bug Fixes
Release 5.40.2 - December 4, 2019
Features
Bug Fixes
Bug Fixes
Release 5.40.3 - December 9, 2019
Features
None.
Bug Fixes
Renamed the run summary
Avg %Q30
metric label to
% ≥Q30
.
Fixed an issue that prevented the download of analysis results.
