arrow-left

All pages
gitbookPowered by GitBook
1 of 1

Loading...

Prep Libraries

circle-exclamation

The Prep tab is deprecated and no longer available. For run planning and sequencer integration, see the Run Planning section.

hashtag
Prep Libraries

circle-exclamation

If your kit is not listed but is compatible with your sequencing system, set up a custom library prep kit or select a kit that uses the same index adapter set. For example, select Nextera Rapid Capture for TruSight Cardio.

  1. In the Libraries page, select the Library Prep Kit drop-down arrow, and select a kit.

  2. In the Plate ID field, enter a unique plate ID.

  3. [Optional] In the Notes field, enter any notes. For Nextera Rapid Capture libraries, specify that the plate contains multiple enrichments.

circle-info

Biological samples are assigned an index even if you are not performing indexed sequencing. During run setup, you can specify no indexing.

[Optional] Assign the sample to a different project.

  1. Select the checkbox of each library to assign to a project.

  2. Select Set Project.

  3. In the Select Project dialog, select or create a project to assign libraries to, and then select Select.

  • Select Auto Prep to automatically assign each library to a well and index location. For Nextera Rapid Capture libraries, samples belonging to the same enrichment must be in the same row. Each plate has a maximum layout of 12 indexes by 8 indexes. If you require more wells or indexes, create multiple plates.

  • [Optional] To change indexes, select an index on the plate and select a new index from the drop-down list. NOTE: This option is not available for fixed layout plates.

  • [Optional] Move libraries to a different well as follows. Select the checkbox of the library to move. Drag the selected library from the Libraries area to the appropriate well.

  • Select Export to save your library prep settings in a .csv file. This file serves as a reference when preparing samples in the lab.

  • [Optional] Select additional plates as follows.

    1. SelectSave and Continue Later to return to Libraries.

    2. Select the checkbox of each library you want to use.

  • Select Pool Libraries.