Compatibility

Last Updated: July 2025

Document Version: 4

Terminology

IPP = Illumina Preset Protocol
IRM = Illumina Run Manager
LRM = Local Run Manager
CSW = Control Software
OSW = Operating Software

Instrument Integrations

It is strongly recommended to install the latest workflow version that is compatible with the integration.

iScan

Module = BaseSpaceLIMS-SIS-iScan

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.2.0

Multiple (iLASS Infinium v1.1)

6.2.0 and above

CSW 4.2.1
IPP 2.9.0 and above
SIS Core 2.4.0

1.1.0

Multiple (iLASS Infinium v1.0)

6.2.0 and above

CSW 4.2.1
IPP 2.6.0 and above
SIS Core 2.4.0

MiSeq

Module = ClarityLIMS-Illumina-MiSeq-Package-v8

Version

Workflow version

Clarity LIMS version

Other Compatibilities

8.3.0

3.2

6.2.0 and above

CSW 4.0.0, 4.1.0
IPP 2.9.0 and above

8.2.0

3.2

6.2.0 only

CSW 4.0.0, 4.1.0
IPP 2.6.0 and above

MiSeq i100 Series

Hosted

Module = ClarityLIMS-SIS-MiSeqi100Series-Package

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.10.0 and above
SIS Core 2.7.0
(Optional) UPA and UPA Script 1.4.0

On-Prem

Module = ClarityLIMS-MiSeqi100Series-OnPremise

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

CSW 1.0.0
IRM 1.8 and above
Clarity LIMS IRM Integration 1.0.0 and above
IPP 2.10.0 and above

MiSeqDx

Module = BaseSpaceLIMS-miseqdx-sequencing-service, BaseSpaceLIMS-miseqdx-extensions

Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.11.0

1.2

6.2.0 and above

OSW 1.1.7
NGS 5.23.0

1.10.0

1.2

6.2.0 only

OSW 1.1.7
NGS 5.23.0

NextSeq 500/550

Module = ClarityLIMS-Illumina-NextSeq-Package-v2

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.5.0

1.3

6.2.0 and above

CSW 4.2.0
LRM 4.0.0
IPP 2.10.0 and above

2.4.0

1.2

6.2.0 and above

CSW 4.0.0
IPP v2.9.0

2.3.0

1.1

6.2.0 only

CSW 4.0.0
IPP 2.6.0 and above

NextSeq 1000/2000

Hosted

Module = BaseSpaceLIMS-SIS-Nextseq1k2k

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.5.1

2.4

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.3.1

2.5.0

2.4

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.2.0

2.4.0

2.3

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0

On-Prem

Module = BaseSpaceLIMS-SIS-Nextseq1k2k-OnPremise

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

CSW 1.5.0
IPP 2.8.0 and above

NovaSeq 6000

API-based

Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

3.7.0

3.8

6.2.0 and above

CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.7.0
(Optional) UPA and UPA Script 1.2.0

3.6.0

3.8

6.2.0 and above

CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.6.0
(Optional) UPA and UPA Script 1.2.0

File-based

Module = BaseSpaceLIMS-novaseq-sequencing-service, BaseSpaceLIMS-novaseq-extensions

Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.6.0

2.3

6.2.0 and above

CSW 1.5.0
NGS 5.23.0

2.5.0

2.3

6.2.0 only

CSW 1.5.0
NGS 5.23.0

NovaSeq 6000Dx

Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.3.0

1.2

6.2.0 and above

OSW 2.3.1
IPP 2.6.0 and above
Sequencer API 2.7.0

1.2.0

1.2

6.2.0 and above

OSW 2.3.1
IPP 2.6.0 and above
Sequencer API 2.6.0

NovaSeq X Series

Hosted

Module = BaseSpaceLIMS-SIS-NovaSeqXSeries

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.3.0

1.2

6.2.0 and above

CSW 1.3.0
Requires BSSH (Professional/Enterprise)
IPP 2.10.0 and above
SIS Core 2.7.0
(Optional) UPA and UPA Script 1.4.0

1.2.1

1.1

6.2.0 and above

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA and UPA Script 1.3.1

1.2.0

1.1

6.2.0 and above

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA 1.2.0 and UPA Script 1.2.1

1.1.0

1.1

6.2.0

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0

On-Prem

Module = ClarityLIMS-NovaSeqXSeries-OnPremise

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

CSW 1.3.0
IRM 1.7 and above
Clarity LIMS IRM Integration 1.0.0 and above
IPP 2.10.0 and above

Other Integration Modules

Illumina Preset Protocol

Module = BaseSpaceLIMS-Illumina-Preset-Protocols

Version

Clarity LIMS version

Other Compatibilities

2.10.0

6.2.0 and above

NGS 5.25.0 and above

2.9.0

6.2.0 and above

NGS 5.25.0 and above

2.8.0

6.2.0 and above

NGS 5.25.0 and above

2.7.0

6.2.0 and above

NGS 5.24.0 and above

2.6.0

6.2.0 and above

NGS 5.23.0 and above

The Library Prep Validation workflow in Illumina Preset Protocol is UPA-enabled and is compatible with UPA and UPA Script 1.2.0 and above. It is recommended to use the latest UPA version.

Illumina Run Manager Integration

Module = ClarityLIMS-Illumina-Run-Manager-Integration

Version

Clarity LIMS version

Other Compatibilities

1.0.0

6.2.0 and above

NGS Extension

Module = Clarity LIMS-NGS-Package-v5

Version

Clarity LIMS version

Other Compatibilities

5.25.1

6.2.0 and above

5.25.0

6.2.0 and above

5.24.0

6.2.0 and above

5.23.0

6.2.0 and above

Sequencer-API

Module = BaseSpaceLIMS-sequencer-api

Version

Clarity LIMS version

Other Compatibilities

2.7.0

6.2.0 and above

2.6.0

6.2.0 and above

SIS-Core

Module = BaseSpaceLIMS-SIS-Core

Version

CLIMS version

Other Compatibilities

2.7.0

6.2.0 and above

2.6.0

6.2.0 and above

2.5.0

6.2.0 and above

2.4.0

6.2.0 and above

UPA

UPA

Module = BaseSpaceLIMS-unified-product-analytics

Version

CLIMS version

Other Compatibilities

1.4.0

6.2.0 and above

1.3.1

6.2.0 and above

1.3.0

6.2.0 and above

1.2.0

6.2.0 and above

UPA Script

Module = BaseSpaceLIMS-unified-product-analytics-scripts

Version

CLIMS version

Other Compatibilities

1.4.0

6.2.0 and above

UPA v1.4.0

1.3.1

6.2.0 and above

UPA v1.3.0

1.3.0

6.2.0 and above

UPA v1.3.0

1.2.1

6.2.0 and above

UPA v1.2.0

1.2.0

6.2.0 and above

UPA v1.2.0

Revision History

Version

Changes

Updated compatibility
- NGS Extension
- Illumina Preset Protocol (Other Compatibilities)

Updated compatibility
- NextSeq 500/550
- NovaSeq X Series (Hosted)
- Illumina Preset Protocols
- SIS-Core
- UPA
Added new compatibility
- MiSeq i100 Series (Hosted and On-Prem)
- NovaSeq X Series (On-Prem)
- Illumina Run Manager Integration

Updated compatibility of NextSeq 500/550.

Initial release.

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