Label Non-Labeled Outputs
Available from: Clarity LIMS v2.0.5
A user may need to add reagent labels to sample outputs that do not have reagent labels assigned to them.
Script Overview
The labelNonLabeledOutputs script provides the ability to add reagent labels to sample outputs for which there is no pre-existing reagent label.
The script checks each process output for existing reagent labels; if an output does not have at least one pre-existing reagent label then the label supplied as a script parameter is applied.
For each output that does not already have a reagent label applied to it (e.g. control samples), the script will apply a reagent label named with the supplied string.
In the Preconfigured Package for Illumina NGS, all sequencing libraries go through a demultiplex process to both convert data to FASTQ and demultiplex reads if necessary. Note that presently, inputs that do not have a reagent label do not create an output in a demultiplex process even though we need BCL convertor to convert their reads to FASTQ.
Script Parameters
Parameter
Description
-u {username}
(Required) LIMS login username
-p {password}
(Required) LIMS login password
-i {URI}
(Required) LIMS process URI (must have at least one sample output)
-l {name}
(Required) Reagent label to be applied
Command Line Example
You may also find the following script useful: Initialize Artifact UDFs
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