Release Date: July 2025
These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.25.1.
Refer to Compatibility under Instruments & Integrations.
Template File Generator - fixed script failure when reading project UDF from a pool containing control sample.
Fixed security vulnerabilities.
An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.
Updates Java and third-party dependency libraries.
Updates Groovy to v3.0.7.
Stopwatch parameter -s is replaced with the -stopwatch parameter for NGS 5.21.0 and later.
The sample sheet for the MiSeq now shows the following information:
The pool name instead of the sample name when the pool contains only one sample.
The well and plate information for submitted samples instead of for libraries.
Fixed issue where the template file generator created duplicate lines for the first data source entry when using multiple data sources.
Fixed issue where the driver file generator did not append the existing log file.
The changeWorkflow script on the No Output step reflects the correct number of samples being routed.
Fixed the Insecure Input Validation (SRCCLR-SID-22742) vulnerability.
Fixed degradation of the LLTK script performance when updating the custom field with an empty string.
Fixed degradation of the log file download performance when automation performs write actions on an existing log file.
Improved the LLTK script error messages to show details of artifacts.
An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.
Version
Changes
2
Updated Compatibility section to reference Compatibility matrix table.
1
Initial release.
Added the download_attachments script. This script copies one or more result files attached in a step to a user-specified directory within Clarity LIMS. For example, this script can copy a generated sample sheet to a mounted directory so that the user can access it directly from the instrument control software.
None
An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.
Version
Changes
2
Updated Compatibility section to reference Compatibility matrix table.
1
Initial release.
Last Updated: November 2024
Release Date: February 2024
Document Version: 2
These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.24.0.
Refer to under Instruments & Integrations.
Added the following scripts:
validate_selected_container
validate_same_udf_valuee_for_analytes
None
An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.
The -s in the stopwatch parameter is replaced with -stopwatch in NGS v5.21 and later.
Version
Changes
2
Updated Compatibility section to reference Compatibility matrix table.
1
Initial release.