The Illumina MiSeq i100 Series On-Prem Integration Package v1.0.0 supports the integration of Clarity LIMS to MiSeq i100 Series instruments that are on-premise via Illumina Run Manager.
Prerequisites
Prerequisite 1: Clarity LIMS v6.2 or later with SecretUtil v1.5.0.12 or later
The MiSeq i100 Series On-Prem integration v1.0 relies on secret management util version 1.5.0.12 or later to store the access token to Illumina Run Manager and its related secrets.
Prerequisite 2: Illumina Run Manager Integration Service v1.0.0 or later
Illumina Run Manager Integration Service v1.0 or later is required for this integration.
Prerequisite 3: Illumina Preset Protocols (IPP) v2.10 with NGS Commons Package v5.25.0 or later
Illumina Preset Protocols (IPP) v2.10 package contains the workflow configuration and template files required to enable the MiSeq i100 Series On-Prem workflow to run properly.
Install the workflow configurations below on the same server on which you intend to install the MiSeq i100 Series On-Prem integration.
MiSeq i100 Series On-Prem Sequencing v1.0 workflow
Library Prep Validation v2.3.5 workflow (optional, but recommended)
NGS Commons Package v5.25.0 or later is required for Step Automation to work properly.
Installation Steps
Steps:
Install / Upgrade Clarity LIMS
Install and Configure Illumina Run Manager Integration Service
Install or upgrade to Clarity LIMS v6.2 or later. If you are using an older version of Clarity LIMS, please contact Illumina Support (techsupport@illumina.com) to schedule for upgrade.
Step 2: Install and Configure Illumina Run Manager Integration Service