Manual Upgrade

MiSeq Integration v8.2.0 includes the MiSeq v3.2 workflow upgrade. This upgrade is typically done through the API. To upgrade the workflow manually, create the Validate Single Input automation and update its trigger information as follows.

Before updating the script, make sure the MiSeq v3.1 workflow is installed.

Create Validate Single Input Automation

1. In Clarity LIMS, under Configuration, select the Automation tab.

2. Select New Automation.

3. Create an automation called Validate Single Input.

4. In the Command Line field, add the following string:

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   bash -l -c "/opt/gls/clarity/bin/java -jar /opt/gls/clarity/extensions/ngs-common/v5/EPP/ngs-extensions.jar -i {stepURI:v2} -u {username} -p {password} script:validateSampleCount -min 1 -max 1"

5. Under Automation Use, enable this automation on the Denature and Dilute master step.

Change Trigger Point for the Validate Single Input Automation

1. In Clarity LIMS, under Configuration, select the Lab Work tab.

2. Find the Denature and Dilute step.

3. In the Automation section, update the Trigger Location and Trigger Style for the Validate Single Input automation as follows.

   • Trigger Location — Step

   • Trigger Style — Automatic upon entry