Document Version: 5
Terminology
IPP = Illumina Preset Protocol
IRM = Illumina Run Manager
LRM = Local Run Manager
CSW = Control Software
OSW = Operating Software
It is strongly recommended to install the latest workflow version that is compatible with the integration.
Module = BaseSpaceLIMS-SIS-iScan
Module = ClarityLIMS-Illumina-MiSeq-Package-v8
Hosted
Module = ClarityLIMS-SIS-MiSeqi100Series-Package
On-Prem
Module = ClarityLIMS-MiSeqi100Series-OnPremise
Module = BaseSpaceLIMS-miseqdx-sequencing-service, BaseSpaceLIMS-miseqdx-extensions
Workflow is part of extensions RPM.
Module = ClarityLIMS-Illumina-NextSeq-Package-v2
Hosted
Module = BaseSpaceLIMS-SIS-Nextseq1k2k
On-Prem
Module = BaseSpaceLIMS-SIS-Nextseq1k2k-OnPremise
API-based
Module = BaseSpaceLIMS-sequencer-api
File-based
Module = BaseSpaceLIMS-novaseq-sequencing-service, BaseSpaceLIMS-novaseq-extensions
Workflow is part of extensions RPM.
Module = BaseSpaceLIMS-sequencer-api
Hosted
Module = BaseSpaceLIMS-SIS-NovaSeqXSeries
On-Prem
Module = ClarityLIMS-NovaSeqXSeries-OnPremise
Module = BaseSpaceLIMS-Illumina-Preset-Protocols
The Library Prep Validation workflow in Illumina Preset Protocol is UPA-enabled and is compatible with UPA and UPA Script 1.2.0 and above. It is recommended to use the latest UPA version.
Module = ClarityLIMS-Illumina-Run-Manager-Integration
Module = Clarity LIMS-NGS-Package-v5
Module = BaseSpaceLIMS-sequencer-api
Module = BaseSpaceLIMS-SIS-Core
UPA
Module = BaseSpaceLIMS-unified-product-analytics
UPA Script
Module = BaseSpaceLIMS-unified-product-analytics-scripts
1.1.0
1.1
6.2.0
CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.6.0 and above
6.2.0 and above
NGS 5.24 and above
2.6.0
6.2.0 and above
NGS 5.23 and above
6.2.0 and above
6.2.0 and above
6.2.0 and above
UPA v1.2.0
1.2.0
6.2.0 and above
UPA v1.2.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.2.0
Multiple (iLASS Infinium v1.1)
6.2.0 and above
CSW 4.2.1
IPP 2.9.0 and above
SIS Core 2.4.0
1.1.0
Multiple (iLASS Infinium v1.0)
6.2.0 and above
CSW 4.2.1
IPP 2.6.0 and above
SIS Core 2.4.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
8.3.0
3.2
6.2.0 and above
CSW 4.0.0, 4.1.0
IPP 2.9.0 and above
8.2.0
3.2
6.2.0 only
CSW 4.0.0, 4.1.0
IPP 2.6.0 and above
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.1.0
2.0
6.2.0 and above
CSW 1.1.0
Requires BSSH (Professional/Enterprise)
IPP 2.11.0 and above
SIS Core 2.7.1
(Optional) UPA and UPA Script 1.5.0
1.0.0
1.0
6.2.0 and above
CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.10.0 and above
SIS Core 2.7.0
(Optional) UPA and UPA Script 1.4.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.1.0
2.0
6.2.0 and above
CSW 1.1.0
IRM 1.9 and above
Clarity LIMS IRM Integration 1.1.0 and above
IPP 2.11.0 and above
1.0.0
1.0
6.2.0 and above
CSW 1.0.0
IRM 1.8 and above
Clarity LIMS IRM Integration 1.0.0 and above
IPP 2.10.0 and above
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.11.0
1.2
6.2.0 and above
OSW 1.1.7
NGS 5.23.0
1.10.0
1.2
6.2.0 only
OSW 1.1.7
NGS 5.23.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.5.0
1.3
6.2.0 and above
CSW 4.2.0
LRM 4.0.0
IPP 2.10.0 and above
2.4.0
1.2
6.2.0 and above
CSW 4.0.0
IPP v2.9.0
2.3.0
1.1
6.2.0 only
CSW 4.0.0
IPP 2.6.0 and above
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.5.1
2.4
6.2.0 and above
CSW 1.5.0, 2.0.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.3.1
2.5.0
2.4
6.2.0 and above
CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.2.0
2.4.0
2.3
6.2.0 and above
CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.0.0
1.0
6.2.0 and above
CSW 1.5.0, 2.0.0
IPP 2.8.0 and above
Version
Workflow version
Clarity LIMS version
Other Compatibilities
3.7.0
3.8
6.2.0 and above
CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.7.0
(Optional) UPA and UPA Script 1.2.0
3.6.0
3.8
6.2.0 and above
CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.6.0
(Optional) UPA and UPA Script 1.2.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.6.0
2.3
6.2.0 and above
CSW 1.5.0
NGS 5.23.0
2.5.0
2.3
6.2.0 only
CSW 1.5.0
NGS 5.23.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.3.0
1.2
6.2.0 and above
OSW 2.3.1
IPP 2.6.0 and above
Sequencer API 2.7.0
1.2.0
1.2
6.2.0 and above
OSW 2.3.1
IPP 2.6.0 and above
Sequencer API 2.6.0
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.3.0
1.2
6.2.0 and above
CSW 1.3.0
Requires BSSH (Professional/Enterprise)
IPP 2.10.0 and above
SIS Core 2.7.0
(Optional) UPA and UPA Script 1.4.0
1.2.1
1.1
6.2.0 and above
CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA and UPA Script 1.3.1
1.2.0
1.1
6.2.0 and above
CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA 1.2.0 and UPA Script 1.2.1
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.0.0
1.0
6.2.0 and above
CSW 1.3.0
IRM 1.7 and above
Clarity LIMS IRM Integration 1.0.0 and above
IPP 2.10.0 and above
Version
Clarity LIMS version
Other Compatibilities
2.11.0
6.2.0 and above
NGS 5.25 and above
2.10.0
6.2.0 and above
NGS 5.25 and above
2.9.0
6.2.0 and above
NGS 5.25 and above
2.8.0
6.2.0 and above
NGS 5.25 and above
Version
Clarity LIMS version
Other Compatibilities
1.1.0
6.2.0 and above
1.0.0
6.2.0 and above
Version
Clarity LIMS version
Other Compatibilities
5.25.1
6.2.0 and above
5.25.0
6.2.0 and above
5.24.0
6.2.0 and above
5.23.0
6.2.0 and above
Version
Clarity LIMS version
Other Compatibilities
2.7.0
6.2.0 and above
2.6.0
6.2.0 and above
Version
CLIMS version
Other Compatibilities
2.7.1
6.2.0 and above
2.7.0
6.2.0 and above
2.6.0
6.2.0 and above
2.5.0
6.2.0 and above
Version
CLIMS version
Other Compatibilities
1.5.0
6.2.0 and above
1.4.0
6.2.0 and above
1.3.1
6.2.0 and above
1.3.0
6.2.0 and above
Version
CLIMS version
Other Compatibilities
1.5.0
6.2.0 and above
UPA v1.5.0
1.4.0
6.2.0 and above
UPA v1.4.0
1.3.1
6.2.0 and above
UPA v1.3.0
1.3.0
6.2.0 and above
UPA v1.3.0
Version
Changes
5
Updated compatibility
NextSeq 1000/2000 (Hosted and On-Prem)
MiSeq i100 Series (Hosted and On-Prem)
Illumina Preset Protocol
Illumina Run Manager Integration
SIS-Core
UPA
4
Updated compatibility
NGS Extension
Illumina Preset Protocol (Other Compatibilities)
3
Updated compatibility
NextSeq 500/550
NovaSeq X Series (Hosted)
Illumina Preset Protocols
SIS-Core
UPA
Added new compatibility
MiSeq i100 Series (Hosted and On-Prem)
NovaSeq X Series (On-Prem)
2
Updated compatibility of NextSeq 500/550.
1
Initial release.
2.7.0
2.4.0
1.2.0
1.2.1
(Optional) UPA and UPA Script 1.2.0