Last Updated: December 2024
Document Version: 3
Terminology
IPP = Illumina Preset Protocol
IRM = Illumina Run Manager
LRM = Local Run Manager
CSW = Control Software
OSW = Operating Software
It is strongly recommended to install the latest workflow version that is compatible with the integration.
Module = BaseSpaceLIMS-SIS-iScan
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.2.0
Multiple (iLASS Infinium v1.1)
6.2.0 and above
CSW 4.2.1
IPP 2.9.0 and above
SIS Core 2.4.0
1.1.0
Multiple (iLASS Infinium v1.0)
6.2.0 and above
CSW 4.2.1
IPP 2.6.0 and above
SIS Core 2.4.0
Module = ClarityLIMS-Illumina-MiSeq-Package-v8
Version
Workflow version
Clarity LIMS version
Other Compatibilities
8.3.0
3.2
6.2.0 and above
CSW 4.0.0, 4.1.0
IPP 2.9.0 and above
8.2.0
3.2
6.2.0 only
CSW 4.0.0, 4.1.0
IPP 2.6.0 and above
Hosted
Module = ClarityLIMS-SIS-MiSeqi100Series-Package
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.0.0
1.0
6.2.0 and above
CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.10.0 and above
SIS Core 2.7.0
(Optional) UPA and UPA Script 1.4.0
On-Prem
Module = ClarityLIMS-MiSeqi100Series-OnPremise
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.0.0
1.0
6.2.0 and above
CSW 1.0.0
IRM 1.8 and above
Clarity LIMS IRM Integration 1.0.0 and above
IPP 2.10.0 and above
Module = BaseSpaceLIMS-miseqdx-sequencing-service, BaseSpaceLIMS-miseqdx-extensions
Workflow is part of extensions RPM.
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.11.0
1.2
6.2.0 and above
OSW 1.1.7
NGS 5.23.0
1.10.0
1.2
6.2.0 only
OSW 1.1.7
NGS 5.23.0
Module = ClarityLIMS-Illumina-NextSeq-Package-v2
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.5.0
1.3
6.2.0 and above
CSW 4.2.0
LRM 4.0.0
IPP 2.10.0 and above
2.4.0
1.2
6.2.0 and above
CSW 4.0.0
IPP v2.9.0
2.3.0
1.1
6.2.0 only
CSW 4.0.0
IPP 2.6.0 and above
Hosted
Module = BaseSpaceLIMS-SIS-Nextseq1k2k
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.5.1
2.4
6.2.0 and above
CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.3.1
2.5.0
2.4
6.2.0 and above
CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.2.0
2.4.0
2.3
6.2.0 and above
CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0
On-Prem
Module = BaseSpaceLIMS-SIS-Nextseq1k2k-OnPremise
Version
Workflow version
Clarity LIMS version
Other Compatibilities
1.0.0
1.0
6.2.0 and above
CSW 1.5.0
IPP 2.8.0 and above
API-based
Module = BaseSpaceLIMS-sequencer-api
Version
Workflow version
Clarity LIMS version
Other Compatibilities
3.7.0
3.8
6.2.0 and above
CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.7.0
(Optional) UPA and UPA Script 1.2.0
3.6.0
3.8
6.2.0 and above
CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.6.0
(Optional) UPA and UPA Script 1.2.0
File-based
Module = BaseSpaceLIMS-novaseq-sequencing-service, BaseSpaceLIMS-novaseq-extensions
Workflow is part of extensions RPM.
Version
Workflow version
Clarity LIMS version
Other Compatibilities
2.6.0
2.3
6.2.0 and above
CSW 1.5.0
NGS 5.23.0
2.5.0
2.3
6.2.0 only
CSW 1.5.0