# Clarity LIMS v6.3 Reference Guide

- [Dashboards](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/dashboards.md): The Dashboards, Projects & Samples, and Lab View screens facilitate the day-to-day tasks of the lab manager and lab scientist.
- [Overview Dashboard](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/dashboards/overview-dashboard.md)
- [Projects Dashboard](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/dashboards/projects-dashboard.md)
- [Projects and Samples](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples.md)
- [Projects](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples/projects.md): Projects section of the Clarity LIMS Documentation discuss how to create and work with projects.
- [Samples Accessioning](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples/samples-accessioning.md)
- [Sample List for Batch Import](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples/samples-accessioning/sample-list-for-batch-import.md): This section describes how to add a large number of samples to the LIMS by importing a sample list - a Microsoft® Excel® \*.xls or \*.xlsx spreadsheet file.
- [Guidelines and Tips for Batch Sample Import](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples/samples-accessioning/guidelines-and-tips-for-batch-sample-import.md)
- [Assign and Process Samples](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/projects-and-samples/assign-and-process-samples.md)
- [Lab View](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/lab-view.md): Lab View is the main screen in Clarity LIMS.
- [Requeue and Rework Samples](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/lab-view/requeue-and-rework-samples.md)
- [Storing Sample Aliquots for Later Use](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/lab-view/storing-sample-aliquots-for-later-use.md)
- [Modifying Completed Step Details](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/lab-view/modifying-completed-step-details.md)
- [Alert Notifications](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/lab-view/alert-notifications.md)
- [Configuration](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration.md)
- [Lab Work](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work.md): Use the Lab Work configuration screen to model the workflows, protocols, and master steps used in the lab on the Lab Work configuration screen.
- [Steps and Master Steps](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work/steps-and-master-steps.md): Steps & Master Steps section of the LIMS Documentation explain how to create and configure steps and master steps in the LIMS.
- [Step Milestones](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work/steps-and-master-steps/step-milestones.md): This section explains the relationship between milestones, master steps, and steps; shows how to access milestone configuration settings; and provides an overview of each milestone.
- [Derived Sample Naming Convention Tokens](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work/steps-and-master-steps/derived-sample-naming-convention-tokens.md)
- [Protocols](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work/protocols.md): In Clarity LIMS, a protocol is a set of steps that must be performed in a specific sequence, as part of a lab's workflow. This section explain how to create and configure your lab protocols.
- [Workflows](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/lab-work/workflows.md): In Clarity LIMS, a workflow is a set of protocols arranged in a sequence that corresponds to the way in which work is performed in the lab. This page explain how to create and configure your workflow.
- [Consumables](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables.md)
- [Reagents](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/reagents.md): This section describes how to add and configure the reagent kits and lots used in your lab, and enable them for use on specific master steps.
- [Reagent Kit Lot Manifest for Batch Import](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/reagents/reagent-lot-manifest-for-batch-import.md): This section describes how to batch create reagent kit lot to the LIMS by importing a Reagent Kit lot list - a Microsoft® Excel® \*.xls or \*.xlsx spreadsheet file.
- [Controls](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/controls.md): This section describes how to add and configure the control samples used in your lab, and enable them for use on specific master steps.
- [Instruments](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/instruments.md): This section describes how to add and configure the instruments and equipment used in your lab, and associate these items with master steps.
- [Labels](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/labels.md): This section describes how to add and configure label groups (reagent categories) and labels (reagent types or molecular barcodes), and enable them for use on specific master steps.
- [Containers](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/consumables/containers.md): This section describes how to add and configure the containers used in your lab, and enable them for use on specific master steps.
- [Custom Fields](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/custom-fields.md): In Clarity LIMS, custom fields are used to record information about a step, sample, or other LIMS component.
- [User Management](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/user-management.md): The User Management configuration screen allows for viewing and managing users, clients, and accounts.
- [Manage User Access](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/user-management/manage-user-access.md)
- [User Roles](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/user-management/user-roles.md)
- [Configured Role-Based Permissions](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/user-management/configured-role-based-permissions.md)
- [User and Profile Page](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/user-management/user-and-profile-page.md): This section describes how to update some of the details associated with your profile, including your password, email address, and profile photo.
- [Automations](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/automations.md): This section describes how to add and configure the three types of automations in Clarity LIMS: step automations, project automations, and derived sample automations.
- [Automation Trigger Configuration](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/automations/automation-trigger-configuration.md)
- [Copy Custom Fields from Step Input to Output](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/automations/copy-custom-fields-from-step-input-to-output.md)
- [Template Files Associated With Automations](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/configuration/automations/template-files-associated-with-automations.md)
- [Automated Quality Control](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/automated-quality-control.md)
- [Configure a QC System](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/automated-quality-control/configure-a-qc-system.md)
- [Search](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/search.md)
- [Basic Search](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/search/basic-search.md)
- [Advanced Search](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/search/advanced-search.md)
- [Genealogy View](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/genealogy-view.md)
- [System Performance](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/system-performance.md)
- [Queue Performance and Usability](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/system-performance/queue-performance-and-usability.md)
- [Demultiplexing API Endpoint Performance](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/system-performance/demultiplexing-api-endpoint-performance.md)
- [Terms and Definitions](https://help.claritylims.illumina.com/clarity-lims-v6.3-and-lablink-v2.5/clarity-lims-v6.3-reference-guide/terms-and-definitions.md)