Installation and User Interaction

Prerequisites on LIMS related configuration

Prerequisite 1: Clarity LIMS v6.2 or later

Illumina Run Manager Integration package requires Clarity LIMS v6.2 or later.

If Clarity LIMS is deployed On-Premise and using vault-based secret storage, ensure that the appropriate ACL Policy is configured on HashiCorp Vault. The steps can be found in Authentication ACL Policies under On-Premise Deployments > Configure Your HashiCorp Vault in Clarity LIMS (Clarity & LabLink Reference Guide) documentation.

Installation Steps

Follow the steps below to set up Illumina Run Manager Integration Service to connect to an Illumina instrument.

1. Install and configure Illumina Run Manager Integration Package v1.0.0

2. Install supported on premise integration package

Step 1: Install and Configure Illumina Run Manager Integration Package v1.0.0

The installation and configuration steps are as follows:

1. Install the Illumina Run Manager Integration package from the repo, using root user with yum or your preferred package manager.

   Example with YUM:

   yum install ClarityLIMS-Illumina-Run-Manager-Integration

   Example with RPM:

   rpm -i ClarityLIMS-Illumina-Run-Manager-Integration-{version}.86_64.rpm

2. Switch to user glsjboss.

3. Run Illumina Run Manager Integration package post-installation configuration script.

   /opt/gls/clarity/config/configure_illumina_run_manager_integration.sh

   Enter the details of Clarity LIMS SSL/TLS certificate configuration and complete the configuration.

Step 2: Install Supported On Premise Instrument Integration

Please refer to individual instrument integration documentations and complete the installation steps listed there.