Revision History

Change	Date	Description of Change
Clarity v6.3.5 IRM v1.1.2 Sequencer API 2.7.2	June 2026	Added Clarity LIMS v6.3.5 release notes. Added legacy release notes of Clarity LIMS v5.4, v6.0 and v6.1 under Clarity & LabLink > Other Release Notes Updated Known Issues for Clarity LIMS v6.3. Updated the following pages in API and Database: Application Examples > Miscellaneous Scripts > Copying Output UDFs to Submitted Samples Application Examples > Miscellaneous Scripts > Parsing Sequencing Meta-Data into Clarity LIMS Application Examples > Miscellaneous Scripts > Submit to a Compute Cluster via PBS Application Examples > Resources and References > Understanding LIMS ID Prefixes Application Examples > Resources and References > Unsupported Process Types Application Examples > Scripts that Help Automate Steps > Applying Indexing Patterns to Containers Automatically Application Examples > Scripts that Help Automate Steps > Assignment of Sample Next Steps Based on a UDF Application Examples > Scripts that Help Automate Steps > Automatic Placement of Samples Based on Input Plate Map Application Examples > Scripts that Help Automate Steps > Automatic Placement of Samples Based on Input Plate Map (Multiple Plates) Application Examples > Scripts that Help Automate Steps > Automatic Pooling Based on a Sample UDF/Custom Field Application Examples > Scripts that Help Automate Steps > Automatic Sample Placement into Existing Containers Application Examples > Scripts that Help Automate Steps > Creating Multiple Containers/Types for Placement Application Examples > Scripts that Help Automate Steps > Publishing Files to LabLink Application Examples > Scripts that Help Automate Steps > Setting a Default Next Action Application Examples > Scripts that Help Automate Steps > Setting Quality Control Flags Application Examples > Scripts that Help Automate Steps > Starting a Protocol Step via the API Application Examples > Scripts that Validate Step Contents > Checking that Containers are Named Appropriately Application Examples > Scripts Triggered Outside of Workflows/Steps > Adding Users in Bulk Application Examples > Scripts Triggered Outside of Workflows/Steps > Assigning Samples to New Workflows Cookbook > Work with Multiplexing > Apply Reagent Labels When Samples are Imported Cookbook > Work with Processes/Steps > Run a Process/Step Tips and Tricks > Remote HTTP Filestore Setup Updated Clarity LIMS v6.2.0, v6.2.1 and v6.3.4 release notes Updated the following pages in Clarity LIMS v6.2 and v6.3: Administration > Enforcing Unique Sample Names Within a Project Clarity LIMS Reference Guide > Configuration > User Management > User Roles Clarity LIMS Reference Guide > Configuration > Lab Work > Steps and Master Steps > Step Milestones Reordered listing of documents in API and Database. Added the following packages and their related documentation: Illumina Run Manager Integration v1.1.2 Sequencer API v2.7.2 Update NextSeq 1000/2000 v2.4.0 internal installation documentation
IPP v2.12	April 2026	Updated compatibility table. Added the following packages and their related documentation to support IPP v2.12: IGA Library Prep Automated v3.0 Illumina Run Manager Integration v1.1.1 NextSeq 1000/2000 Integration v2.6.0 NextSeq 1000/2000 On-Prem Integration v1.1.0 NovaSeq X Series Integration v1.4.0 NovaSeq X Series On-Prem Integration v1.1.0 Added the following release notes: IPP v2.0.0, v2.2.0, v2.3.0, v2.4.0 and v2.5.0 iScan v1.0.0 MiSeq Integration v6.0.0, v6.0.1, v8.0.0 and v8.1.0 MiSeqDx Integration v1.0.0, v1.1.0, v1.5.0 and v1.9.0 NextSeq 1000/2000 Integration v1.0.5, v2.0.0, v2.1.0, v2.1.1, v2.2.0, v2.3.0 and v2.3.1 NextSeq 500/550 Integration v2.0.0, v2.0.3, v2.1.0 and v2.2.0 NovaSeq 6000 API-based Integration v3.2.1, v3.2.2, v3.3.0, v3.4.0, v3.5.0 and v3.5.1 NovaSeq 6000 File-based Integration v2.1.0, v2.2.0, v2.2.1, v2.2.2, v2.3.0, v2.4.0 and v2.4.1 NovaSeq 6000Dx Integration v1.0.0 and v1.1.0 NovaSeq X Series Integration v1.0.0
Clarity v6.3.4	December 2025	Added Clarity LIMS v6.3.4 release notes. Updated Known Issues for Clarity LIMS v6.3. Updated Guide to Secret Management. Updated Remote HTTP Filestore Setup.
IPP v2.11	November 2025	Updated compatibility table. Updated integration properties table. Added the following packages and their related documentation to support IPP v2.11: Clarity LIMS Product Analytics v1.5.0 Illumina Run Manager Integration v1.1.0 MiSeq i100 Series Integration v1.1.0 MiSeq i100 Series On-Premise Integration v1.1.0 Added the following release notes: Clarity LIMS Product Analytics v1.2.0, v1.3.0, v1.3.1 and v1.4.0 Illumina Run Manager Integration v1.0.0
Clarity v6.3.3	September 2025	Added Clarity LIMS v6.3.3 release notes. Fixed file link for MiSeqSamplesheetv3 in IPP v2.8 Manual Upgrade guide.
Add Customer Notifications	August 2025	Added new Customer Notifications section Added new customer notifications for Clarity LIMS Hosted Instance Interruption
Clarity v6.3.2 NGS v5.25.1	July 2025	Added Clarity LIMS v6.3.2 release notes. Updated Technical Overview (technical requirements), System Settings (global tokens) and Installation and Upgrade Guide (technical requirements) in Clarity LIMS v6.3 documentation. Updated Derived Sample Automation Tokens, Step Automation Tokens and Project Automation Tokens in API Portal (Automation -> Automation Tokens) Added NGS v5.25.1 release notes and Transfer Files using Rsync Between Hosted Clarity Instance and Customer File Server For File-Based Integrations. Updated configuration guide for NextSeq 1000/2000 Integration v2.4.0 and v2.5.0. Updated Template File Contents in Lab Instrument Toolkit. Updated the following release notes: MiSeq Integration v8.2.0 MiSeq Integration v8.3.0 MiSeqDx Integration v1.11.0 NextSeq 500/550 Integration v2.3.0 NextSeq 500/550 Integration v2.4.0 NovaSeq 6000 Integration v3.7.0 NovaSeq 6000Dx Integration v1.3.0 Updated compatibility table.
Updates: Impact assessment of PostgreSQL v15.13 Automatic placement configuration of step milestones	June 2025	Updated Clarity LIMS v6.2.1, v6.3.0 and v6.3.1 Release Notes on impact assessment of PostgreSQL v15.13. Updated configuration (step milestones) that automatic placement supports only placement by shape.
Clarity LIMS Technical Overview (updates)	May 2025	Updated Environment Overview section (for hosted deployment) on system synchronization for accurate timekeeping and consistent log timestamps.
IPP v2.10	December 2024	Updated compatibility table. Updated integration properties table. Added the following packages and their related documentation to support IPP v2.10: Clarity LIMS Product Analytics v1.4 Illumina Run Manager Integration v1.0 MiSeq i100 Series Integration v1.0 MiSeq i100 Series On-Premise Integration v1.0 NextSeq 500/550 Integration v2.5 NovaSeq X Series Integration v1.3 NovaSeq X Series On-Premise Integration v1.0
Clarity v6.3.1	November 2024	Added Clarity LIMS v6.3.1 release notes, Enabling, validating and disabling audit trail and Backup and Restore procedure to Clarity LIMS v6.3 documentation. Updated Clarity LIMS v6.3.0 release notes, managing configurations with configure slicer, on premise to on premise upgrade procedures and on premise to on premise in place upgrade procedures in Clarity LIMS v6.3 documentation. Updated NextSeq 500/550 Integration v2.4.0 Installation and IPP v2.9 Installation and User Configuration to correct typo. Updated known limitations in release notes for NovaSeq X Series Integration v1.1.0, v1.2.0 and v1.2.1. Updated all integration release notes to reference the compatibility table under Instruments & Integrations. Added Clarity LIMS Integrations & Tool Kits, and Preset Protocols documentation for IPP versions v2.6 to v2.9.
Clarity v6.3 IPP v2.9	July 2024	Initial release in new help format.