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Release Notes

NGS Extensions v5.23.0

Last Updated: November 2024

Release Date: September 2023

Document Version: 2

These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.23.0.

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Compatibility

Refer to under Instruments & Integrations.

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New Features

  • Updates Java and third-party dependency libraries.

  • Updates Groovy to v3.0.7.

  • Stopwatch parameter -s is replaced with the -stopwatch parameter for NGS 5.21.0 and later.

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Defects Fixed

  • The sample sheet for the MiSeq now shows the following information:

    • The pool name instead of the sample name when the pool contains only one sample.

    • The well and plate information for submitted samples instead of for libraries.

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Known Issues

  • An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.

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Revision History

Fixed issue where the template file generator created duplicate lines for the first data source entry when using multiple data sources.
  • Fixed issue where the driver file generator did not append the existing log file.

  • The changeWorkflow script on the No Output step reflects the correct number of samples being routed.

  • Fixed the Insecure Input Validation (SRCCLR-SID-22742) vulnerability.

  • Fixed degradation of the LLTK script performance when updating the custom field with an empty string.

  • Fixed degradation of the log file download performance when automation performs write actions on an existing log file.

  • Improved the LLTK script error messages to show details of artifacts.

  • Version

    Changes

    2

    • Updated Compatibility section to reference Compatibility matrix table.

    1

    • Initial release.

    Compatibility

    NGS Extensions v5.24.0

    Last Updated: November 2024

    Release Date: February 2024

    Document Version: 2

    These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.24.0.

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    Compatibility

    Refer to under Instruments & Integrations.

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    New Features

    Added the following scripts:

    • validate_selected_container

    • validate_same_udf_valuee_for_analytes

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    Defects Fixed

    None

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    Known Issues

    An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.

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    Other

    The -s in the stopwatch parameter is replaced with -stopwatch in NGS v5.21 and later.

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    Revision History

    Version

    Changes

    2

    • Updated Compatibility section to reference Compatibility matrix table.

    1

    • Initial release.

    Compatibility

    NGS Extensions v5.25.1

    Release Date: July 2025

    These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.25.1.

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    Compatibility

    Refer to Compatibility under Instruments & Integrations.

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    Defects and Security Vulnerability Fixed

    • Template File Generator - fixed script failure when reading project UDF from a pool containing control sample.

    • Fixed security vulnerabilities.

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    Known Issues

    An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.

    NGS Extensions v5.25.0

    Last Updated: November 2024

    Release Date: June 2024

    Document Version: 2

    These release notes detail the key changes to software components for the Next Generation Sequencing (NGS) Extensions Package v5.25.0.

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    Compatibility

    Refer to Compatibility under Instruments & Integrations.

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    New Features

    Added the download_attachments script. This script copies one or more result files attached in a step to a user-specified directory within Clarity LIMS. For example, this script can copy a generated sample sheet to a mounted directory so that the user can access it directly from the instrument control software.

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    Defects Fixed

    None

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    Known Issues

    An error occurs when reformatting the date using the Lab Logic Toolkit with the Date utility class. The date reformatting can be done with java.time instead.

    hashtag
    Revision History

    Version

    Changes

    2

    • Updated Compatibility section to reference Compatibility matrix table.

    1

    • Initial release.