2026

2026 April 27 - ICA v2.45.0

Git-Sourced pipelines are described in detail here. See this page for a basic example of how to configure and use the feature.

New Features and Enhancements

• General

  • The createTemporaryCredentials endpoint POST /api/projects/{projectId}/data/{dataId}:createTemporaryCredentials now returns an expiryDate for the AWS temporary credentials so clients (including Bench) can refresh before the credentials expire. See createTemporaryCredentialsForData.

• Base

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• Bench

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• Cohorts

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• Data Management

  • The data-search endpoint GET /api/projects/{projectId}/data now accepts analysisId and analysisDataType filters so you can list files produced by a specific analysis (supported for analyses created in v2.41 and later). See getProjectDataList.

• Flow

  • All users can now import Nextflow pipelines from Git

  • Nextflow v20.10 is no longer supported. See Nextflow

  • The analysis object available to pipeline onGenomeView, onRender, and onSubmit JavaScript hooks now includes the analysis status as a string (null during onRender and onSubmit).

Fixed Issues

• General

  • Read-only dropdown, date, and dialog fields no longer show the open-picker icon, so it's clearer at a glance that they can't be edited.

  • Fixed an 'Unexpected error occurred when updating project permission' error that could appear when editing team permissions on a project using billing-mode project.

  • Two users in the same tenant can now reuse a credential name. Previously, creating credentials failed if another user had already used the same name.

  • The GET /api/storageConfigurations response now includes the storageCredentials id, so you no longer need a separate lookup to find which credential a storage configuration uses.

• Base

  • Base Query now supports columns of type TIMESTAMPTZ (timestamp with time zone). Queries that previously returned an 'Unexpected error' now run as expected. (fixes a known issue).

• Bench

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• Cohorts

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• Data Management

  • Fixed icav2 projectdata copy hanging when the source file is archived. The copy now fails immediately with a clear error.

• Flow

  • You can now sort the Steps tab of an analysis (list view) by column — for example, to find the longest-running steps.

  • Launching an analysis with a non-empty 'user log' folder now displays a warning in the analysis details instead of silently overwriting the existing log files.

  • Pipeline clone API (POST /api/projects/{projectId}/pipelines/{pipelineId}:clone) improvements: the error message now distinguishes between 'Project' and 'Project/Bundle' when the source pipeline is not linked to the target project.

  • POST /api/projects/{projectId}/pipelines/{pipelineId}:clone, Name and code are now mandatory and return a validation error when omitted

  • POST /api/projects/{projectId}/pipelines/{pipelineId}:clone, pipeline names and codes containing disallowed characters are now rejected with a clear error instead of silently creating an invalid pipeline.

  • POST /api/projects/{projectId}/pipelines/{pipelineId}:clone, the response body now matches POST /api/projects/{projectId}/pipelines:createCwlJsonPipeline and includes projectId and bundleLinks.

2026 Apr 9 - ICA v2.44.2

Fixed Issues

• General

  • Fixed an issue where calling the following endpoints without a version resulted in a 500 internal server error. These endpoints will now default to V3 if no version is specified.

    • GET /projects/{projectId}/pipelines

    • POST /projects/{projectId}/pipelines:createCwlPipeline

    • POST /projects/{projectId}/pipelines:createNextflowPipeline

2026 Apr 7 - ICA v2.44.1

Fixed Issues

• General

  • Fixed an issue where creating a Docker image from a Docker file while in tree view resulted in a constraint violation.

2026 Apr 2 - ICA v2.44.0

New Features and Enhancements

• General *

• Base *

• Bench

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• Cohorts

  • Create Cohort page now dynamically updates subject attributes and counts based on the selected project and study filters.

  • Molecular Breakdown page now allows users to identify filtered subject lists by gene and clinical attribute values.

  • Marker Frequency Analysis now supports germline data, enabling gene‑level carrier frequency calculations across cohorts.

  • New REST APIs provide programmatic access to PromoterAI, PrimateAI, and SpliceAI scores using variant IDs.

• Data Management

  • The data grid now displays a Type column (file/folder) as the first frozen column,

    includes improved search UX with mode toggle tooltips (“Flat view”/“Folder view”),

    redesigned breadcrumbs, and contextual search result captions.

  • Parent folder and path information are now combined into a single column in the

    data grid for a cleaner layout.

• Flow

  • Users can now delete pipelines directly from the pipeline detail screen in the UI.

Fixed Issues

• General

  • Fixed an issue where pop-up windows (Export, Schedule for download, Create

    folder, etc.) could be opened multiple times simultaneously.

  • Fixed the Bundle creation screen so the Save button is active immediately;

    required-field validation now appears on click rather than disabling the button.

  • Fixed a session/EntityManager closed error related to idle database transactions.

  • Fixed duplicate redundant scrollbars appearing in several UI areas.

• Base

  • Fixed the “Page unresponsive” issue when switching tabs in the Base Query screen.

  • Fixed the Base Query History search returning “Free text search is not supported”

    error.

  • Fixed Base reference fields showing internal IDs instead of UUIDs for

    pipeline_reference and sample_reference.

  • Renamed 'execution_reference_id' to 'analysis_id' and 'sample_reference_id' to

    'sample_id' in Base tables for clarity.

• Bench

  • Fixed GPU Bench workspaces failing to start; GPU instances updated from p3 to g5

    instance family. Additional GPU families will be released in future versions.

  • Fixed a 403 Forbidden nginx error that could appear after creating a tool in Bench.

  • Fixed Docker build being allowed on a running workspace whose image had been

    deleted.

  • Fixed Docker not working on Bench cluster worker nodes when ephemeral disk size

    was 0.

  • Fixed long workspace names displaying partially outside their field boundary.

  • Fixed an error (okio.Socket) when starting a Bench workspace.

• Cohorts

  • Fixed an issue where data ingestion via the Cohorts UI could fail for newly created ICA projects.

  • Import Jobs page now displays full job messages for improved visibility and troubleshooting.

  • Fixed an issue where cohort counts were incorrectly updated when delete jobs included blacklisted subjects.

  • Fixed an issue where shared cohort subject counts did not refresh correctly on the cohort list page.

  • Fixed an issue where loading cohorts with deleted blacklisted subjects could result in a 400 error.

• Data Management

  • Fixed an issue where copying a folder within the same project with “Keep both”

    produced an error instead of creating a copy.

  • Fixed parent folder breadcrumbs not appearing when navigating into a subfolder

    from flat view.

• Flow

  • Fixed an issue where analyses did not sort properly by Request date after using

    search.

  • Fixed input data not being dropped on Rerun for XML-based pipelines with

    configuration changes.

  • Fixed resource type duplicates appearing in graphical mode CWL machine profiles.

  • Fixed UI text overlap when long paths are entered in Logs/Output folder fields

    during analysis.

  • Fixed an error when clicking Preview during Graphical CWL pipeline creation.

  • Fixed inconsistent pipeline name validation when a slash (/) character was used.

  • Fixed an issue where Nextflow JSON pipelines could not be started.

  • Fixed the GET /api/projects/{projectId}/pipelines endpoint missing the ‘status’

    parameter for non Draft/Released pipeline statuses.

2026 Feb 25 - ICA v2.43.0

New Features and Enhancements

• General

  • Improved error identification for forms that have multiple tabs

• Base

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• Bench

  • Users now can select different Docker images for head nodes and worker nodes in Bench cluster workspaces. This gives users increased flexibility in how analyses are provisioned and run.

• Cohorts

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• Data Management

  • ICA Storage Configurations now support IAM roles for improved security when accessing a customer-owned S3 bucket. Going forward, this is the recommended way to create new credentials. Corresponding APIs also have been updated.

  • Improved data search capabilities on the data tab

• Flow

  • Improved guardrails to reduce bugs when users interact with pipeline statuses

Fixed Issues

• General

  • GPU instances updated from p3 to g5 instance family. Additional GPU families will be released in the near future.

  • API - POST /api/projects - The project creation endpoint now enforces a maximum string length of 255 characters for the "storageConfigurationSubfolder" field.

  • UI stability improvement for text editor.

• Base

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• Bench

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• Cohorts

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• Data Management

  • Improved error handling and retry logic for moving folders.

• Flow

  • Fixed issue where specifying mount paths for input data did not work with data URNs.

  • Fixed issue with invalid numeric values able to be entered in CWL editor.

  • Fixed issue where not all CLI commands were supporting JSON input forms.

2026 Jan 28 - ICA v2.42.0

Multi-user bench workspaces will no longer authenticate automatically. To use the CLI in these workspaces, you must provide an API key within the workspace. Single-user workspaces will continue to authenticate automatically. For workspaces created before this release, the change will take effect after they are restarted.

New Features and Enhancements

• General

  • Nextflow v25.10 is now available and the default Nextflow version

  • Added support for pipeline filtering within the analysis list view API

• Data Management

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• Base

  • Minor updates to the Base UI

• Bench

  • Multi-user bench workspaces will no longer authenticate automatically.

  • Created images will always be owned by the creating user, regardless of which domain the user is in

• Flow

  • Improved guardrails to reduce bugs when users interact with pipeline statuses

• Cohorts

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Fixed Issues

• General

  • The help icon now works appropriately when a banner message is displayed

• Flow

  • Fixed an issue where an empty folder would be created when a user used custom output log folders in their analysis.

  • Analysis and workflow details now appropriately show in the UI.

  • Validation errors on invalid email entries for analysis notifications no longer persist after the email is corrected

  • Refreshing an analysis input form no longer automatically fills the email notification field with the last used email address

• Base

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• Bench

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• Data Management

  • Fixed an issue that caused copy and paste of URL to not show filtered results when combining folders with filters

  • Data copy now prevents recursive copying of data with the "copy from" command

• Cohorts

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