# Configure

- [Configuration](https://help.connected.illumina.com/connected-insights/configure/configuration.md)
- [Custom Case Data](https://help.connected.illumina.com/connected-insights/configure/configuration/c-custom-case-data-definition.md)
- [Pipeline and QC Configuration](https://help.connected.illumina.com/connected-insights/configure/configuration/c-pipeline-and-qc-configuration.md)
- [Preferred Transcripts](https://help.connected.illumina.com/connected-insights/configure/configuration/c-preferred-transcripts.md)
- [Custom Annotations](https://help.connected.illumina.com/connected-insights/configure/configuration/c-custom-annotations.md)
- [Disease Configuration](https://help.connected.illumina.com/connected-insights/configure/configuration/c-disease-configuration.md)
- [Variant Filters](https://help.connected.illumina.com/connected-insights/configure/configuration/c-variant-filters.md)
- [Variant Flag Groups](https://help.connected.illumina.com/connected-insights/configure/configuration/c-variant-flag-groups.md)
- [Actionability Classifications](https://help.connected.illumina.com/connected-insights/configure/configuration/c-custom-actionability-classification.md)
- [Report Templates](https://help.connected.illumina.com/connected-insights/configure/configuration/reports-report-templates.md)
- [Customizations](https://help.connected.illumina.com/connected-insights/configure/configuration/reports-report-templates/reports-report-customizations.md)
- [Report Automation](https://help.connected.illumina.com/connected-insights/configure/configuration/c-automation.md)
- [Lab Information](https://help.connected.illumina.com/connected-insights/configure/configuration/c-lab-information.md)
- [Test Definitions](https://help.connected.illumina.com/connected-insights/configure/configuration/c-test-definition-setup.md)
- [Data Upload](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction.md)
- [Data Upload from User Storage (Connected Insights - Cloud and Connected Insights - Local)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-user-storage.md)
- [Data Upload from ICA or BSSH (Connected Insights - Cloud)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-ica.md)
- [Supported Pipelines](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.6.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.6.2.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.6.1 (with HRD)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.6.1-with-hrd.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.6.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.6.1.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.6.0 (with HRD)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.6.0-with-hrd.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.6.0](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.6.0.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.5.3 (with HRD)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.5.3-with-hrd.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.5.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.5.3.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.5.2 (with HRD)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.5.2-with-hrd.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.5.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.5.2.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.1.1 (with HRD)](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.1.1-with-hrd.md)
- [DRAGEN TruSight Oncology 500 Analysis Software v2.1.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-analysis-software-v2.1.1.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.6.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.6.3.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.6.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.6.2.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.6.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.6.1.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.6.0](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.6.0.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.5.0](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.5.0.md)
- [DRAGEN TruSight Oncology 500 ctDNA Analysis Software v2.1.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-trusight-oncology-500-ctdna-analysis-software-v2.1.1.md)
- [DRAGEN Solid WGS Tumor Normal v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-solid-wgs-tn-v4.4.md)
- [DRAGEN Heme v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-heme-v4.4.md)
- [DRAGEN Heme v1.0](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-heme-v1.0.md)
- [DRAGEN Amplicon v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-amplicon-v4.4.md)
- [DRAGEN Amplicon v4.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-amplicon-v4.3.md)
- [DRAGEN Amplicon v4.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-amplicon-v4.2.md)
- [DRAGEN Amplicon v4.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-amplicon-v4.1.md)
- [DRAGEN RNA v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-rna-v4.4.md)
- [DRAGEN RNA v4.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-rna-v4.3.md)
- [DRAGEN RNA v4.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-rna-v4.2.md)
- [DRAGEN RNA v4.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-rna-v4.1.md)
- [DRAGEN Somatic Enrichment and Whole Genome v4.4.6](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-somatic-enrichment-and-whole-genome-v4.4.6.md)
- [DRAGEN Somatic Enrichment v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-enrichment-v4.4.md)
- [DRAGEN Somatic Enrichment v4.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-enrichment-v4.3.md)
- [DRAGEN Somatic Enrichment v4.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-enrichment-v4.2.md)
- [DRAGEN Somatic Enrichment v4.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-enrichment-v4.1.md)
- [DRAGEN for Illumina cfDNA Prep with Enrichment v4.0.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-for-illumina-cfdna-prep-with-enrichment-v4.0.3.md)
- [DRAGEN Somatic Whole Genome v4.4](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-somatic-whole-genome-v4.4.md)
- [DRAGEN Somatic Whole Genome v4.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-somatic-whole-genome-v4.3.md)
- [DRAGEN Somatic Whole Genome v4.2](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-somatic-whole-genome-v4.2.md)
- [DRAGEN Somatic Whole Genome v4.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/dragen-somatic-whole-genome-v4.1.md)
- [TruSight Tumor 170 Local App v2.0.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/trusight-tumor-170-local-app-v2.0.1.md)
- [Local Run Manager TruSight Tumor 15 Analysis Module v2.1](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/local-run-manager-trusight-tumor-15-analysis-module-v2.1.md)
- [Archer VariantPlex Pipeline v7.3](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/archer-variantplex-pipeline-v7.3.md)
- [Pillar Biosciences RUO PiVAT Pipeline v2024](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-supported-pipelines/pillar-biosciences-ruo-pivat-pipeline-v2024.md)
- [Custom Pipeline Configuration](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration.md)
- [VCF Input Requirement](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/du-vcf-input-requirement.md)
- [TMB, MSI, GIS Input Requirement](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement.md)
- [TMB JSON Minimal](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/tmb-json-min.md)
- [TMB JSON Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/tmb-json-full.md)
- [TMB CSV Minimal](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/tmb-csv-min.md)
- [TMB CSV Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/tmb-csv-full.md)
- [MSI JSON Minimal](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/msi-json-min.md)
- [MSI JSON Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/msi-json-full.md)
- [GIS JSON Minimal](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/gis-json-min.md)
- [GIS JSON Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/gis-json-full.md)
- [HRD CSV Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/hrd-csv-full.md)
- [HLA TSV Full](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-pipeline-configuration/tmb-msi-gis-input-requirement/hla-tsv-full.md)
- [Custom Case Data Upload](https://help.connected.illumina.com/connected-insights/configure/configuration/du-introduction/du-custom-case-dataupload.md)
- [Upload Assertions](https://help.connected.illumina.com/connected-insights/configure/du-assertion-upload.md)
- [Local Installation Guide](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide.md)
- [Overview](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-introduction.md)
- [Prerequisites](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-prerequisites.md)
- [Download Connected Insights Package](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-downloaderutility.md)
- [Install Illumina Administration Console Software](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-installconnectedinsightssoftware.md)
- [Sign In to Illumina Connected Insights software](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-signintoconnectedinsights.md)
- [Install Connected Insights - Local Software](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-installconnectedinsightssoftware-1.md)
- [Install License Files](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-installlicensefile.md)
- [Installation Status Messages](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/ici-installationstatusmsg.md)
- [Local Configurations](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/admin-overview.md)
- [Administration Console (Connected Insights - Local)](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/admin-overview/admin-administration-console.md)
- [Configure External storage](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/admin-overview/configure-storage.md)
- [Data Backup (Connected Insights - Local)](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/admin-overview/troub-data-backup.md)
- [How To](https://help.connected.illumina.com/connected-insights/configure/local-installation-guide/admin-overview/how-to.md)


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