> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/connected-insights/configure/configuration/c-pipeline-and-qc-configuration.md).

# Pipeline and QC Configuration

Configure the pipeline metrics that appear on the report and edit the default values for each metric as follows.

1. On the top toolbar, select **Configuration**, and then select the **General** tab.
2. In the left-side pane, select **Pipeline & QC Configuration**.
3. Select the applicable pipeline. QC metric configurations display to the right of the selection.
4. Select **Edit**.
5. To add or remove metrics from the report, select the **Add to Overview & Report** toggle for each metric.
6. To edit specification limits for applicable metrics, select the Lower Spec Limit or Upper Spec Limit fields and enter the new value. If you cannot edit a value, NA replaces the field.
7. \[Optional] To undo all of your changes, select **Reset to Default Values**.
8. Select **Save**. The updated metrics appear in the Lab QC tab of the case along with the Pass/Fail designations.


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