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For the complete documentation index, see llms.txt. This page is also available as Markdown.

TMB, MSI, GIS Input Requirement

Tumor Mutational Burden (TMB)

File Type
Sample File Name
Examples

JSON

*.tmb.json

Minimal | Full

CSV

*.tmb.metrics.csv

Minimal | Full

Microsatellite Instability (MSI)

File Type
Sample File Name
Examples

JSON

*.msi.json

Minimal | Full

Genomic Instability Score (GIS)

File Type
Sample File Name
Examples

JSON

*.gis.json

Minimal | Full

Homologous Recombination Deficiency Score (HRD)

File Type
Sample File Name
Examples

CSV

*.hrdscore.csv

Full

Human Leukocyte Antigen Genotype (HLA)

File Type
Sample File Name
Examples

TSV

*.hla.tsv

Full

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