MSI JSON Full
{
"Settings": {
"Command": "tumor-only",
"MicrosatelliteFilePath": "resource_bundle\/msi\/references\/microsatellites-TSO500-SOLID-concordant.list",
"RefereceNormalDirectory": "resource_bundle\/msi\/data\/TSO500-Solid",
"FilterReferenceAllele": "false",
"FilterDuplexReads": "false",
"MinHomopolymerAllele": "5",
"PValueThreshold": "0.01",
"DistanceThreshold": "0.10000000149011612",
"SpanningCoverageThreshold": "60",
"DistanceSignDependsOnDensityDifference": "false",
"MinReferencePeakHeight": "0",
"MinLeftPeakHeight": "0",
"MinLeftPeakRatio": "0",
"MaxLeftPeakRatio": "3.40282347e+38",
"OutputDirectory": "DnaDragenCaller",
"OutputPrefix": "28_DNA_Mixed_Training_rep1"
},
"TotalMicrosatelliteSitesAssessed": "77",
"TotalMicrosatelliteSitesUnstable": "1",
"PercentageUnstableSites": "1.3",
"ResultIsValid": "true",
"ResultMessage": "",
"SumDistance": "0.20699999999999999"
}Last updated
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