> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/connected-insights/interpret-and-report/viewdetails-introduction/viewdetails-gene-overview.md).

# Gene Overview

This section is only available for variants that overlap a transcript.

## Gene symbols

A searchable dropdown shows all genes that the variant overlaps. Select one to view the information below.

## Gene Descriptions

<table><thead><tr><th width="164">Column</th><th>Description</th></tr></thead><tbody><tr><td>Update Date</td><td>The last date that the assertion was updated.</td></tr><tr><td>Source</td><td>Knowledge base origin of the gene description.</td></tr><tr><td>Role</td><td>The specified gene role.</td></tr><tr><td>Summary</td><td>Gene description.</td></tr><tr><td>Previously Reported Icon</td><td>Any cases where the assertion was previously reported.</td></tr><tr><td>Actions</td><td>This column contains the following available actions:<br>• Add to report<br>• Archive, if the assertion is in My Knowledge Base<br>• Copy to New Assertion, if the assertion is not in My Knowledge Base<br><br>To edit an assertion, add it to the report before editing. For more information, refer to <a href="/pages/HqkoElM87bMRuPjxus13#editing-assertions">Manage Assertions</a>.</td></tr></tbody></table>

### Available Knowledge Bases

**Memorial Sloan Kettering OncoKB**

Connected Insights provides the Memorial Sloan Kettering OncoKB. For more information, refer to the OncoKB website.

**Jackson Clinical Knowledge Base (JAX-CKB)**

Connected Insights provides the Jackson Clinical Knowledge Base (JAX-CKB). For more information, refer to the Jackson CKB website.

**Clinical Interpretation of Variants in Cancer (CIViC)**

Connected Insights also provides the Clinical Interpretation of Variants in Cancer (CIViC) knowledge base. For more information, refer to the CIViC website.

## Gene-Related Diseases

The associated phenotypes in ClinGen and OMIM databases and links to open the entries in the databases in a new browser tab.

## Gene Expression

Gene expression is shown in transcripts per million (TPM) if provided by the secondary analysis pipeline (e.g., DRAGEN RNA).

## External Links

The following external links are included in this section:

* PubMed
* MGI
* DECIPHER
* GeneReviews
* Monarch
* ZFIN
* STRING


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.connected.illumina.com/connected-insights/interpret-and-report/viewdetails-introduction/viewdetails-gene-overview.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
