No Variant Calling (Methylation Only) - Non-human

Input the following command to your local DRAGEN server:

/opt/edico/bin/dragen \
--output-directory ${desired_location} \
--fastq-list ${fastq-list.csv} \
--ref-dir ${mouse_ref_v11hashtable} \
--enable-map-align true \
--enable-map-align-output true \
--enable-duplicate-marking true \
--methylation-conversion illumina \
--output-file-prefix=${string}

Note: Update the ${text} fields with the parameter specified