When using DRAGEN Array – Genotyping cloud analysis type, you have the following configuration options available via the "Add Custom Configuration" option in Configuration Settings:
Output File Selection: Flexibility to turn off/on specific output files
VCF output can be toggled on or off
Final Report output can be toggled on or off
GenCall Score Cutoff: Adjustable threshold for genotype calling quality
Recommendations
For non-human species: It is recommended to turn off VCF output, as VCF generation requires genome mapping which is only provided for human genomes (GRCh37 and GRCh38).
For large sample numbers: It is recommended to turn off Final Report output, as Final Report files can become very large with high sample counts and may impact performance.
