> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/dragen-clinical-research-apps/readme/common.md).

# Common Product Features

## Run Planning

<table><thead><tr><th width="162.6796875">Application</th><th width="192.80859375">Supported in BSSH Run Planner</th><th>Note</th></tr></thead><tbody><tr><td><a href="/pages/jNpHNRVMGIEyduw2ZGCX">Heme WGS TO</a></td><td>Yes</td><td>Mixed flow cell, auto-launch</td></tr><tr><td><a href="/pages/8AKCc8Sis9OwIUOWzpdb">Solid WGS TN</a></td><td>No</td><td>Only Header and TN_Data sections required in SampleSheet.csv</td></tr></tbody></table>

## Sample Sheets

All the clinical research workflow pipelines support only [v2 sample sheet](/dragen-clinical-research-apps/readme/common/run-planning.md) and requires index2 to be in forward orientation, with bcl-convert SoftwareVersion >= 4.4. The pipelines are stil compatible with legacy sample sheets where the BCLConvert\_Settings section has SoftwareVersion < 4.4. Sample sheet v1 is no longer supported.

## ICA Cloud Applications

The clinical research workflow pipelines in the ICA cloud support [post-processing scripts](/dragen-clinical-research-apps/readme/common/cloud/post-processing.md) to be executed after the completion of the pipeline analysis.

## ICI Variant Interpretation

The clinical research workflow pipelines support [automatic data ingestion or manual upload into ICI for variant interpretation](/dragen-clinical-research-apps/readme/common/cloud/ici-setup.md) after the analysis is completed in ICA, or using a [DRAGEN on-premises server locally](/dragen-clinical-research-apps/readme/common/server/advanced/ici-on-prem.md).


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.connected.illumina.com/dragen-clinical-research-apps/readme/common.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
