Local Specific Output

Local output management

Common output files for cloud and local pipelines are described in the Analysis Output.

On DRAGEN server, Nextflow logs are contained in the Work folder in a hierarchical folder structure organized by the tasks in the pipeline_trace.txt. These files are prefixed with "." and hidden from normal view.

• 📂 Work — (DRAGEN server only) - Contains information and files related to Nextflow execution

  • 📄 .command.log - Contains Nextflow pipeline step execution log.

  • 📄 .command.out - Contains Nextflow pipeline step standard output log.

  • 📄 .command.err - Contains Nextflow pipeline step standard error log.

  • 📄 .exit.code - Contains Nextflow pipeline step execution exit code.