> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/dragen-clinical-research-apps/readme/dragen-heme-wgs-to-pipeline/setup/advanced.md).

# Advanced Topics

## Overview

The pipeline supports advanced use cases:

* Selected custom parameters may be configured using a configuration file, and associated custom pipeline resource files.
* The pipeline supports automatic data streaming from instruments and automatic launch of analysis in ICA, followed by tertiary interpretation in ICI.
* The pipeline supports mix flow cells where different assays are sequenced in the same flow cell.


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