Single-Cell Clustering

UMAP Plot

The UMAP plot allows visualization of individual cells in 2D space to capture the similarities between cells. Louvain clustering is performed to quantify and visualize heterogeneity within the cell population and begin to identify different cell types.

Top Marker Genes

The Top Marker Genes table includes the top 10 marker genes for each cluster of the UMAP. These genes can be used to identify subpopulations that correspond to actual biology. For each gene, the gene name, ENSEMBL gene ID, log2 fold change, and pValue are shown. The contents of the table are also available in CSV format by selecting Download CSV.