Introduction

Illumina StrataMap software

Welcome to the user documentation for the Illumina StrataMap analysis software.

For guidance on the assay workflow, please refer to your PDF of the Illumina StrataMap user documentation.

Software user guide format

This software user guide is separated into three sections corresponding to the three software components of the Illumina StrataMap analysis software in order of use.

High level software workflow, the numbers indicate the relevant sections of the user guide, see below

1. Illumina StrataMap Tool (ISIT): the desktop image processing app.

Note: If planning to export sample files from ISIT directly to the cloud, ensure the application is installed on a PC with a stable network connection. On PCs without a stable network connection, export sample files using the local export feature in ISIT. For further assistance, please contact Illumina Support.

1. DRAGEN StrataMap: the secondary and initial tertiary analysis cloud software run on Illumina BioInsight Platform Core (Core) or a local DRAGEN server. This section of the guide also explains how to use the Base Space Sequence Hub (BSSH) Run Planning tool to create a run for sequencing and analysis.
2. Illumina Connected Multiomics (ICM): the visualization and additional tertiary analysis cloud platform. This section of the guide explains portions of the ICM platform specific for spatial visualization and analysis, see the ICM guide for more information about the platform itself.