Self Test

DRAGEN Spatial Transcriptome on DAM includes a self-test to verify that everything is working correctly.

Running the Test

The installation files include run_self_test.sh and self_test_items.tar.gz. To run the test, execute the self-test script. Example:

cd /staging/<path-to-installation-files>/
./run_self_test.sh

What the Self-Test Does

1. Extracts test data from the included archive.
2. Runs a complete analysis using the mm39 reference genome.
3. Verifies all outputs are generated correctly.
4. Cleans up test data after successful completion.

Self-Test Options

Option	Description
--output-dir NAME	Custom output directory name
--dry-run	Generate the payload only; don't execute
--help	Show help message

Expected Results

A successful self-test will show:

=== Self Test and Verification Completed Successfully ===

Passed:  12
Failed:  0
Warnings: 0