# DRAGEN v4.3

- [Getting Started](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/getting-started.md)
- [DRAGEN Host Software](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-host-software.md)
- [DRAGEN Secondary Analysis](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-host-software/dragen-platform.md)
- [DRAGEN Reference Support](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-reference-support.md)
- [Prepare a Reference Genome](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-reference-support/prepare-a-reference-genome.md)
- [DRAGEN DNA Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline.md)
- [DNA Mapping](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/dna-map-align.md)
- [Read Trimming](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/read-trimming.md)
- [DRAGEN FASTQC](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/dragen-fastqc.md)
- [Sorting and Duplicate Marking](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/sort-dupmark.md)
- [Small Variant Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling.md)
- [ROH Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/roh-caller.md)
- [B-Allele Frequency Output](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/baf-output.md)
- [Somatic Mode](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/somatic-mode.md)
- [Joint Analysis](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/joint-analysis.md)
- [De Novo Small Variant Filtering](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/filtering.md)
- [Autogenerated MD5SUM for VCF Files](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/small-variant-calling2.md)
- [Force Genotyping](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/force-genotyping.md)
- [Machine Learning for Variant Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/ml-for-vc.md)
- [Evidence BAM](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/evidence-bam.md)
- [Mosaic Detection](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/mosaic-detection.md)
- [VCF Imputation](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/vcf-imputation.md)
- [Multi-Region Joint Detection](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/small-variant-calling/multi-region-joint-detection.md)
- [Copy Number Variant Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling.md)
- [CNV Output](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/cnv-output.md)
- [CNV with SV Support](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/cnv-with-sv-support.md)
- [Multisample CNV Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/multisample-cnv-calling.md)
- [Somatic CNV Calling WGS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/somatic-cnv-calling-wgs.md)
- [Somatic CNV Calling WES](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/somatic-cnv-calling-wes.md)
- [Allele Specific CNV for Somatic WES CNV](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/cnv-calling/somatic-cnv-calling-wes-ascn.md)
- [Repeat Expansion Detection](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/repeat-expansions.md)
- [De Novo Repeat Expansion Detection](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/repeat-expansions/de-novo-str-detection.md)
- [Targeted Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller.md)
- [CYPDB6 Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/cyp2b6-calling.md)
- [CYP2D6 Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/cyp2d6-calling.md)
- [CYP21A2 Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/cyp21a2-calling.md)
- [GBA Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/gba-calling.md)
- [HBA Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/hba-calling.md)
- [LPA Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/lpa-calling.md)
- [Rh Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/rh-calling.md)
- [SMN Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/targeted-caller/smn-calling.md)
- [Structural Variant Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/sv-calling.md)
- [Structural Variant De Novo Quality Scoring](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/sv-calling/sv-denovo-quality-scoring.md)
- [VNTR Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/vntr-calling.md)
- [Filter Duplicate Variants](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/variant-deduplication.md)
- [Ploidy Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/ploidy-calling.md)
- [Ploidy Estimator](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/ploidy-calling/ploidy-estimator.md)
- [Ploidy Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/ploidy-calling/ploidy-caller.md)
- [Multi Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/multi-caller.md)
- [QC Metrics Reporting](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/qc-metrics-reporting.md)
- [HLA Typing](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/hla-typing.md)
- [Biomarkers](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers.md)
- [Tumor Mutational Burden](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers/biomarker-tmb.md)
- [Microsatellite Instability](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers/biomarker-msi.md)
- [Homologous Recombination Deficiency](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers/biomarker-hrd.md)
- [BRCA Large Genomic Rearrangment](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers/biomarker-brca-large-rearrangement.md)
- [DRAGEN Fragmentomics](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/biomarkers/biomarker-fragmentomics.md)
- [Downsampling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/downsampling.md)
- [Fractional (Raw Reads) Downsampling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/downsampling/fractional-downsampler.md)
- [Effective Coverage Downsampling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/downsampling/downsampling.md)
- [Unique Molecular Identifiers](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/unique-molecular-identifiers.md)
- [Indel Re-aligner (Beta)](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/indel-realigner.md)
- [Star Allele Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/star-allele-caller.md)
- [High Coverage Analysis](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/high-coverage.md)
- [CheckFingerprint](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/checkfingerprint.md)
- [Population Haplotyping (Beta)](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/population-haplotyping.md)
- [DUX4 Rearrangement Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-dna-pipeline/dux4-rearrangement-caller.md)
- [DRAGEN RNA Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline.md)
- [RNA Alignment](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline/rna-alignment.md)
- [Gene Fusion Detection](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline/gene-fusion-detection.md)
- [Gene Expression Quantification](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline/gene-expression-quantification.md)
- [RNA Variant Calling](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline/rna-variant-calling.md)
- [Splice Variant Caller](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-rna-pipeline/splice-variant-caller.md)
- [DRAGEN Single-Cell Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-single-cell-pipeline.md)
- [scRNA](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-single-cell-pipeline/dragen-scrna.md)
- [scATAC](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-single-cell-pipeline/dragen-scatac.md)
- [Single-Cell Multiomics](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-single-cell-pipeline/dragen-multiomics.md)
- [DRAGEN Methylation Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-methylation-pipeline.md)
- [DRAGEN Amplicon Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-amplicon-pipeline.md)
- [Explify Analysis Pipeline](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/pipeline.md)
- [Kmer Classifier](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/pipeline/kmer-classifier.md)
- [Kmer Classifier Database Builder](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/pipeline/kmer-class-db-builder.md)
- [DRAGEN Recipes](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes.md)
- [DNA Germline Panel UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-panel-umi.md)
- [DNA Germline Panel](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-panel.md)
- [DNA Germline WES UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-wes-umi.md)
- [DNA Germline WES](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-wes.md)
- [DNA Germline WGS UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-wgs-umi.md)
- [DNA Germline WGS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-germline-wgs.md)
- [DNA Somatic Tumor-Normal Solid Panel UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-panel-umi.md)
- [DNA Somatic Tumor-Normal Solid Panel](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-panel.md)
- [DNA Somatic Tumor-Normal Solid WES UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-wes-umi.md)
- [DNA Somatic Tumor-Normal Solid WES](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-wes.md)
- [DNA Somatic Tumor-Normal Solid WGS UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-wgs-umi.md)
- [DNA Somatic Tumor-Normal Solid WGS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-normal-solid-wgs.md)
- [DNA Somatic Tumor-Only Heme WGS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-heme-wgs.md)
- [DNA Somatic Tumor-Only Solid Panel UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-panel-umi.md)
- [DNA Somatic Tumor-Only Solid Panel](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-panel.md)
- [DNA Somatic Tumor-Only Solid WES UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-wes-umi.md)
- [DNA Somatic Tumor-Only Solid WES](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-wes.md)
- [DNA Somatic Tumor-Only Solid WGS UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-wgs-umi.md)
- [DNA Somatic Tumor-Only Solid WGS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-solid-wgs.md)
- [DNA Somatic Tumor-Only ctDNA Panel UMI](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/dna-somatic-tumor-only-ctdna-panel-umi.md)
- [RNA Panel](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/rna-panel.md)
- [RNA WTS](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-recipes/rna-wts.md)
- [BCL conversion](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/bcl-conversion.md)
- [Illumina Connected Annotations](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/nirvana.md)
- [ORA Compression](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/ora-compression.md)
- [Command Line Options](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/command-line-options.md)
- [DRAGEN Reports](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/dragen-reports.md)
- [Tools and Utilities](https://help.connected.illumina.com/dragen/dragen-v4.3/product-guide/dragen-v4.3/tools-and-utilities.md)


---

# Agent Instructions: Querying This Documentation

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Perform an HTTP GET request on the current page URL with the `ask` query parameter:

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