DRAGEN Recipes

Overview

The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see Multicaller Workflows

Germline Pipelines

• DNA Germline WGS
• DNA Germline WES
• DNA Germline Panel
• 5 Base DNA Germline WGS
• 5 Base DNA Germline Panel

Germline with UMI Pipelines

• DNA Germline WGS UMI
• DNA Germline WES UMI
• DNA Germline Panel UMI
• 5 Base DNA Germline WGS UMI
• 5 Base DNA Germline Panel UMI

RNA and scRNA Pipelines

• RNA WTS
• RNA Panel
• Illumina scRNA
• Other scRNA prep

Somatic Pipelines

• DNA Somatic Tumor-Normal Solid WGS
• DNA Somatic Tumor-Normal Solid WES
• DNA Somatic Tumor-Normal Solid Panel
• DNA Somatic Tumor-Only Solid WGS
• DNA Somatic Tumor-Only Heme WGS
• DNA Somatic Tumor-Only Solid WES
• DNA Somatic Tumor-Only Solid Panel
• 5 Base DNA Somatic Tumor-Normal Solid WGS
• 5 Base DNA Somatic Tumor-Normal Solid Panel
• 5 Base DNA Somatic Tumor-Only Solid WGS
• 5 Base DNA Somatic Tumor-Only Solid Panel

Somatic with UMI Pipelines

• DNA Somatic Tumor-Normal Solid WGS UMI
• DNA Somatic Tumor-Normal Solid WES UMI
• DNA Somatic Tumor-Normal Solid Panel UMI
• DNA Somatic Tumor-Only Solid WGS UMI
• DNA Somatic Tumor-Only Solid WES UMI
• DNA Somatic Tumor-Only Solid Panel UMI
• DNA Somatic Tumor-Only ctDNA Panel UMI
• 5 Base DNA Somatic Tumor-Only Solid WGS UMI
• 5 Base DNA Somatic Tumor-Only Solid Panel UMI
• 5 Base DNA Somatic Tumor-Only ctDNA Panel UMI

Amplicon Pipelines

• DNA Amplicon
• RNA Amplicon