DRAGEN Recipes

Overview

The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see Multicaller Workflows

Germline Pipelines

• DNA Germline Panel

• DNA Germline WES

• DNA Germline WGS

Germline with UMI Pipelines

• DNA Germline Panel UMI

• DNA Germline WES UMI

• DNA Germline WGS UMI

RNA and scRNA Pipelines

• Illumina scRNA

• Other scRNA prep

• RNA Panel

• RNA WTS

Somatic Pipelines

• DNA Somatic Tumor-Normal Solid Panel
• DNA Somatic Tumor-Normal Solid WES
• DNA Somatic Tumor-Normal Solid WGS
• DNA Somatic Tumor-Only Heme WGS
• DNA Somatic Tumor-Only Solid Panel
• DNA Somatic Tumor-Only Solid WES
• DNA Somatic Tumor-Only Solid WGS

Somatic with UMI Pipelines

• DNA Somatic Tumor-Normal Solid Panel UMI
• DNA Somatic Tumor-Normal Solid WES UMI
• DNA Somatic Tumor-Normal Solid WGS UMI
• DNA Somatic Tumor-Only Solid Panel UMI
• DNA Somatic Tumor-Only Solid WES UMI
• DNA Somatic Tumor-Only Solid WGS UMI
• DNA Somatic Tumor-Only ctDNA Panel UMI