DRAGEN Recipes

Overview

The following sub-pages contain recommended command line options for specific DRAGEN pipelines. For an overview of DRAGEN command line parsing, also see Multicaller Workflows

Germline Pipelines

• DNA Germline Amplicon

• DNA Germline Panel

• DNA Germline WES

• DNA Germline WGS

• 5 Base DNA Germline Panel

• 5 Base DNA Germline WGS

Germline with UMI Pipelines

• DNA Germline Panel UMI

• DNA Germline WES UMI

• 5 Base DNA Germline Panel UMI

RNA and scRNA Pipelines

• Illumina scRNA

• Illumina scRNA Perturb seq

• Other scRNA prep

• RNA Amplicon

• RNA Panel

• RNA WTS

Somatic Pipelines

• DNA Somatic Tumor-Normal Heme WGS

• DNA Somatic Tumor-Normal MRD

• DNA Somatic Tumor-Normal Solid Panel

• DNA Somatic Tumor-Normal Solid WES

• DNA Somatic Tumor-Normal Solid WGS

• DNA Somatic Tumor-Only Heme WGS

• DNA Somatic Tumor-Only Solid Amplicon

• DNA Somatic Tumor-Only Solid Panel

• DNA Somatic Tumor-Only Solid WES

• DNA Somatic Tumor-Only Solid WGS

• DNA Somatic Tumor-Only ctDNA Amplicon

• 5 Base DNA Somatic Tumor-Normal Solid Panel

• 5 Base DNA Somatic Tumor-Normal Solid WGS

• 5 Base DNA Somatic Tumor-Only Solid Panel

• 5 Base DNA Somatic Tumor-Only Solid WGS

Somatic with UMI Pipelines

• DNA Somatic Tumor-Normal Solid Panel UMI

• DNA Somatic Tumor-Normal Solid WES UMI

• DNA Somatic Tumor-Normal Solid WGS UMI

• DNA Somatic Tumor-Only Solid Panel UMI

• DNA Somatic Tumor-Only Solid WES UMI

• DNA Somatic Tumor-Only Solid WGS UMI

• DNA Somatic Tumor-Only ctDNA Panel UMI

• 5 Base DNA Somatic Tumor-Only Solid Panel UMI

• 5 Base DNA Somatic Tumor-Only ctDNA Panel UMI

TruPath Pipelines

• Illumina TruPath Genome WGS