# DRAGEN Single Cell Pipeline

DRAGEN v4.5 provides support for the Illumina Single Cell 3' RNA Prep library based on PIPseq technology.\
[DRAGEN scRNA Illumina Prep User Guide](https://help.connected.illumina.com/dragen/product-guides/dragen-v4.5/dragen-single-cell-pipeline/dragen-scrna-illumina)

DRAGEN also supports analysis of non-Illumina prep single cell samples.\
[DRAGEN scRNA Other Prep User Guide](https://help.connected.illumina.com/dragen/product-guides/dragen-v4.5/dragen-single-cell-pipeline/dragen-scrna-other)

DRAGEN supports single cell ATAC-seq analysis as well.\
[DRAGEN scATAC User Guide](https://help.connected.illumina.com/dragen/product-guides/dragen-v4.5/dragen-single-cell-pipeline/dragen-scatac)

Finally, DRAGEN supports dual analysis of matched scRNA and scATAC samples, referred to as "DRAGEN Single Cell Multiomics".\
[DRAGEN Single Cell Multiomics User Guide](https://help.connected.illumina.com/dragen/product-guides/dragen-v4.5/dragen-single-cell-pipeline/dragen-multiomics)

(Note that DRAGEN Single Cell Multiomics has not yet been tested with Illumina scRNA prep.)