> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/dragen/welcome/assay-dragen-app-mapping.md). # Illumina Assay to DRAGEN Cloud Pipeline Mapping This table identifies the appropriate DRAGEN pipeline for analyzing data output from Illumina assay kits. Visit [Illumina BioInsight Platform Core](https://help.ica.illumina.com/) or [Illumina BaseSpace Sequence Hub](https://help.basespace.illumina.com/) for more information on accessing DRAGEN pipelines in the cloud. | Assay | DRAGEN Pipeline | | ----------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------- | | Illumina Spatial Transcriptome Prep, FF (L) Cloud | DRAGEN Spatial Transcriptome | | Illumina Spatial Transcriptome Prep, FF (S) Cloud | DRAGEN Spatial Transcriptome | | Illumina Spatial Transcriptome Prep, FF (L) Cloud Starter | DRAGEN Spatial Transcriptome | | Illumina Spatial Transcriptome Prep, FF (S) Cloud Starter | DRAGEN Spatial Transcriptome | | ILMN Protein Prep 9.5k Plasma 96 Reactions | DRAGEN Protein Quantification | | ILMN Protein Prep 9.5k Serum 96 Reactions | DRAGEN Protein Quantification | | Illumina 5-Base DNA Prep (24 Samples) Early Access | DRAGEN Germline: 5-Base | | Illumina 5-Base DNA Prep with Enrichment (24 Samples) Early Access | DRAGEN Enrichment: 5-Base | | Illumina 5-Base DNA Prep (24 Samples) | DRAGEN Germline: 5-Base | | Illumina 5-Base DNA Prep with Enrichment (24 Samples) | DRAGEN Enrichment: 5-Base | | Illumina Single Cell 3' RNA Prep, T2 (8 samples, 2000 cells/sample) | DRAGEN Single Cell RNA: T2 | | Illumina Single Cell 3' RNA Prep, T10 (8 samples, 10,000 cells/sample) | DRAGEN Single Cell RNA: T10 | | Illumina Single Cell 3' RNA Prep, T20 (4 samples, 20,000 cells/sample) | DRAGEN Single Cell RNA: T20 | | Illumina Single Cell 3' RNA Prep, T100 (2 samples, 100,000 cells/sample) | DRAGEN Single Cell RNA: T100 | | Illumina Single Cell CRISPR Prep, T10 (8 samples, 10,000 cells/sample) | DRAGEN Single Cell CRISPR: T10 | | Illumina Single Cell CRISPR Prep, T100 (2 samples, 100,000 cells/sample) | DRAGEN Single Cell CRISPR: T100 | | Illumina Single Cell CRISPR Prep, M1 (1 sample, 1 million cells/sample) | DRAGEN Single Cell CRISPR: M1 | | Illumina Single Cell CRISPR Prep, M10 (10 samples, 1 million cells/sample) | DRAGEN Single Cell CRISPR: M10 | | Illumina TruPath Genome (NovaSeq X C8 Flowcell) | DRAGEN Germline: TruPath | | Illumina TruPath Genome (NovaSeq X C2 Flowcell) | DRAGEN Germline: TruPath | | Ribo-Zero Plus Mcrbm Dpltn Kit, 96 | DRAGEN Microbiome Metatranscriptomics | | ILMN VSP V2 Kit, Set A (96 spl) | DRAGEN Microbial Enrichment Plus | | ILMN VSP V2 Kit, Set B (96 spl) | DRAGEN Microbial Enrichment Plus | | ILMN VSP V2 Kit, Set C (96 spl) | DRAGEN Microbial Enrichment Plus | | ILMN VSP V2 Kit, Set D (96 spl) | DRAGEN Microbial Enrichment Plus | | IMAP with MiniSeq Core Cons Kit 48 smp | DRAGEN Microbial Amplicon | | IMAP with MiSeq Core Cons Kit 48 smp | DRAGEN Microbial Amplicon | | Illumina Microbial Amplicon Prep, 48 sample | DRAGEN Microbial Amplicon | | lLMN Microb Amp Prep Infl. A/B (48 Spl) | DRAGEN Microbial Amplicon | | Resp Virus Enrich Kit A (96 idx,96 spl) | DRAGEN Microbial Enrichment Plus | | Resp Virus Enrich Kit B (96 idx,96 spl) | DRAGEN Microbial Enrichment Plus | | Resp Virus Enrich Kit C (96 idx,96 spl) | DRAGEN Microbial Enrichment Plus | | Resp Virus Enrich Kit D (96 idx,96 spl) | DRAGEN Microbial Enrichment Plus | | RPIP Enrich Kit (RUO)(96 idx,96 spl)-A | DRAGEN Microbial Enrichment Plus | | RPIP Enrich Kit (RUO)(96 idx,96 spl)-B | DRAGEN Microbial Enrichment Plus | | RPIP Enrich Kit (RUO)(96 idx,96 spl)-C | DRAGEN Microbial Enrichment Plus | | RPIP Enrich Kit (RUO)(96 idx,96 spl)-D | DRAGEN Microbial Enrichment Plus | | RPIP with MiSeq Core Cons Kit 96 smp | DRAGEN Microbial Enrichment Plus | | RPIP with NS1K2K Core Cons Kit 96 smp | DRAGEN Microbial Enrichment Plus | | Urinary Path. ID/AMR Enrichment Kt SetA | DRAGEN Microbial Enrichment Plus | | Urinary Path. ID/AMR Enrichment Kt SetC | DRAGEN Microbial Enrichment Plus | | VSP w ILMN RNA Prep w Enrich A, 96 Rxns | DRAGEN Microbial Enrichment Plus | | VSP w ILMN RNA Prep w Enrich B, 96 Rxns | DRAGEN Microbial Enrichment Plus | | VSP with MiniSeq Core Cons Kit 96 smp | DRAGEN Microbial Enrichment Plus | | VSP with MiSeq Core Cons Kit 96 smp | DRAGEN Microbial Enrichment Plus | | ILMN VSP V2 Panel (96 spl) | DRAGEN Microbial Enrichment Plus | | RESP. VIRUS OLIGO PANEL v2 | DRAGEN Microbial Enrichment Plus | | Viral Surveillance Panel, RUO 96 rxns | DRAGEN Microbial Enrichment Plus | | IDT ILMN UMI DNA/RNA UDI A Lig 96Id96Spl | DRAGEN ILMN cfDNA prep w/Enrichment | | IDT ILMN UMI DNA/RNA UDI B Lig 96Id96Spl | DRAGEN ILMN cfDNA prep w/Enrichment | | TruSight Oncology Comprehensive (EU) Kit | TruSight Oncology Comprehensive (LRM) | | TruSight Oncology DNA Control | TruSight Oncology Comprehensive (LRM) | | TruSight Oncology RNA Control | TruSight Oncology Comprehensive (LRM) | | TruSight Onco 500 DNA Kt (48 Spl) | DRAGEN TSO 500 | | TruSight Onco 500 DNA Kt, NSQ (48 Spl) | DRAGEN TSO 500 | | TruSight Onco 500 DNA/RNA Kt,NSQ(24 Spl) | DRAGEN TSO 500 | | TruSightOnco 500 DNA Auto Kt,NSQ(64 Spl) | DRAGEN TSO 500 | | TS Onc 500 DNA HT (144 Spl) | DRAGEN TSO 500 | | TS Onc 500 DNA/RNA HT (72 Spl) | DRAGEN TSO 500 | | TSO 500 ctDNA Kit (48 smpl) + Velsera | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 + S2 (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 + S4 (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto (48 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto + S4 (48 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 DNA HT (48 Spl)+Velsera | DRAGEN TSO 500 | | TSO 500 DNA/RNA Auto Kt,NSQ(32 Spl) | DRAGEN TSO 500 | | TSO 500 DNA/RNA HT (24 Spl)+Velsera | DRAGEN TSO 500 | | TSO 500 DNA/RNA HT (72 Spl)+Velsera | DRAGEN TSO 500 | | TSO500 DNA Kit (48 samples)+Velsera | DRAGEN TSO 500 | | TSO500 DNA Kit NextSeq (48Spl)+Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA Auto Kt NSQ(32) + Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA HT Auto (32 spls)+Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA HT Auto(72 spls)+Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA Kit (24Spl)+Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA Kit NextSeq (24)Velsera | DRAGEN TSO 500 | | TSO500 DNA/RNA Kit NextSeq (24) plus Illumina Connected Insights Software | DRAGEN TSO 500 | | TSO500 DNA/RNA HT Auto (32 spls) plus Illumina Connected Insights Software | DRAGEN TSO 500 | | TSO 500 DNA/RNA HT (24 Spl) plus Illumina Connected Insights Software | DRAGEN TSO 500 | | TSO500 DNA/RNA Auto Kt NSQ(32) plus Illumina Connected Insights Software | DRAGEN TSO 500 | | TruSight Oncology 500 ctDNA v2 (24 samples) plus Connected Insights Interpretation Report | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 for Automation (48 samples) plus Connected Insights Interpretation Report | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 plus Connected Insights Interpretation Report, for use with NovaSeq 6000 S2 (24 samples) | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 plus Connected Insights Interpretation Report, for use with NovaSeq 6000 S4 (24 samples) | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 Automation Kit plus Connected Insights Interpretation Report, for use with NovaSeq 6000 S2 (48 samples) | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 Automation Kit plus Connected Insights Interpretation Report, for use with NovaSeq 6000 S4 (48 samples) | DRAGEN TruSight Oncology 500 ctDNA | | oncoReveal Myeloid Panel plus Illumina Connected Insights software | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer CNV + Fusion plus Illumina Connected Insights software | DRAGEN Amplicon Pipeline | | oncoReveal BRCA1 & BRCA2 + CNV plus Illumina Connected Insights software | DRAGEN Amplicon Pipeline | | oncoReveal Essential MPN Panel plus Illumina Connected Insights software | DRAGEN Amplicon Pipeline | | TruSight Oncology Comprehensive | TruSight Oncology Comprehensive (LRM) | | TSO 500 ctDNA v2 +S4 +Velsera (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | oncoReveal BRCA1 & BRCA2 + CNV plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Essential MPN Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer CNV + Fusion plus Correlation Engine software (48 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Myeloid Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Essential LBx Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Core LBx Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Fusion LBx Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer + Fusion Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Solid Tumor v2 Panel plus Correlation Engine software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Essential LBx Panel plus Illumina Connected Insights software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Core LBx Panel plus Illumina Connected Insights software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Fusion LBx Panel plus Illumina Connected Insights software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer + Fusion Panel plus Illumina Connected Insights software (24 samples) | DRAGEN Amplicon Pipeline | | oncoReveal Solid Tumor v2 Panel plus Illumina Connected Insights software (24 samples) | DRAGEN Amplicon Pipeline | | TruSight Oncology 500 DNA High-Throughput Kit (144 Samples), plus Velsera | DRAGEN TSO 500 | | TruSight Oncology 500 DNA Automation Kit plus Velsera interpretation report (16 indexes, 64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 DNA/RNA Automation Kit plus Velsera interpretation report (16 indexes, 32 Samples) | DRAGEN TSO 500 | | TruSight Oncology 500 High-Throughput DNA for Automation (64 Samples), Plus Velsera | DRAGEN TSO 500 | | TruSight Oncology 500 High-Throughput DNA for Automation (144 Samples), Plus Velsera | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit (96 samples) | DRAGEN TSO 500 | | TSO 500 v2 DNA/RNA Kit NSQ (24 spl) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit, For Use with NextSeq 550 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit, For Use with NextSeq 550 (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit, For Use with NextSeq 550 (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit, For Use with NextSeq 1000/2000 P2 (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit, For Use with NextSeq 1000/2000 P2 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit, For Use with NextSeq 1000/2000 P2 (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit, For Use with NextSeq 1000/2000 P2 (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Velsera interpretation report (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Velsera interpretation report (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Velsera interpretation report (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit plus Velsera interpretation report (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Velsera interpretation report (96 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Velsera interpretation report, For Use with NextSeq 550 (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Velsera interpretation report, For Use with NextSeq 550 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Velsera interpretation report, For Use with NextSeq 550 (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit plus Velsera interpretation report, For Use with NextSeq 550 (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Velsera interpretation report, For Use with NextSeq 1000/2000 P2 (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Velsera interpretation report, For Use with NextSeq 1000/2000 P2 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Velsera interpretation report, For Use with NextSeq 1000/2000 P2 (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Illumina Connected Insights Software (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Illumina Connected Insights Software (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Illumina Connected Insights Software (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit plus Illumina Connected Insights Software (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Illumina Connected Insights Software (96 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Illumina Connected Insights Software, For Use with NextSeq 550 (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Illumina Connected Insights Software, For Use with NextSeq 550 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Illumina Connected Insights Software, For Use with NextSeq 550 (32 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Automation Kit plus Illumina Connected Insights Software, For Use with NextSeq 550 (64 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Kit plus Illumina Connected Insights Software, For Use with NextSeq 1000/2000 P2 (24 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA Kit plus Illumina Connected Insights Software, For Use with NextSeq 1000/2000 P2 (48 samples) | DRAGEN TSO 500 | | TruSight Oncology 500 v2 DNA/RNA Automation Kit plus Illumina Connected Insights Software, For Use with NextSeq 1000/2000 P2 (32 samples) | DRAGEN TSO 500 | | TSO 500 ctDNA v2 + P4 (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto + S2 (48 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 + Velsera (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto + Velsera(48 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 +P4 +Velsera (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 +S2 +Velsera (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto+S2+Velsera(48spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 ctDNA v2 Auto+S4+Velsera(48spls) | DRAGEN TruSight Oncology 500 ctDNA | | TruSight Oncology 500 ctDNA v2 plus Illumina Connected Insight Software (24 spls) | DRAGEN TruSight Oncology 500 ctDNA | | TSO 500 v2 DNA Auto Kit ICI P2 (64 spl) | DRAGEN TSO 500 | | TSO500 DNA Auto Kt NSQ(64Spl)+Velsera | DRAGEN TSO 500 | | oncoReveal Myeloid Panel | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer CNV + Fusion | DRAGEN Amplicon Pipeline | | oncoReveal BRCA1 & BRCA2 + CNV | DRAGEN Amplicon Pipeline | | oncoReveal Essential MPN Panel | DRAGEN Amplicon Pipeline | | oncoReveal Essential LBx Panel | DRAGEN Amplicon Pipeline | | oncoReveal Core LBx Panel | DRAGEN Amplicon Pipeline | | oncoReveal Fusion LBx Panel | DRAGEN Amplicon Pipeline | | oncoReveal Multi-Cancer Fusion Panel | DRAGEN Amplicon Pipeline | | oncoReveal Solid Tumor v2 Panel | DRAGEN Amplicon Pipeline | --- # Agent Instructions This documentation is published with GitBook. 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