# Family tree legend

While adding a new case, you will build a pedigree and annotate each of the samples with data required for analysis.

After the case has been created, the family tree is available in the [Case details](/emedgene/emedgene-analyze-manual/getting_around_the_platform/cases_tab/case_details.md) panel (righthand panel of the Cases page).

## Family tree legend:

1. **Icon fill color** in other pedigree members indicates the presence or absence of the proband's phenotypes in a present sample (regardless of the potential presence of additional unrelated phenotypes).

{% columns %}
{% column width="41.66666666666667%" valign="middle" %}

<div align="center"><img src="/files/iVu0MiJufELE0YTtz1Me" alt=""></div>
{% endcolumn %}

{% column width="58.33333333333333%" %}

1. **Filled:** The individual is affected by all of the proband's phenotypes.
2. **Half-filled:** The individual is affected by some of the proband's phenotypes.
3. **Empty:** The individual is not affected by any of the proband's phenotypes.
   {% endcolumn %}
   {% endcolumns %}

2\. **Icon color intensity** denotes whether sample files have been uploaded for the particular individual.

{% columns %}
{% column width="41.66666666666667%" valign="middle" %}

<div align="center"><img src="/files/qfyfQmLL9acODHSfErSS" alt=""></div>
{% endcolumn %}

{% column width="58.33333333333333%" %}

1. **Full color:** The sample has files loaded in the case.
2. **Faded color:** No sample files are available.
   {% endcolumn %}
   {% endcolumns %}

3\. **Icon line type** indicates whether the sample is considered or excluded during analysis (relevant to samples with uploaded files only)

{% columns %}
{% column width="41.66666666666667%" valign="middle" %}
![](/files/t4CKijfLmmNQ29enWVYd)
{% endcolumn %}

{% column width="58.33333333333333%" %}

1. **Solid:** The sample is included in the analysis.
2. **Dashed:** The sample is ignored by Inheritance filters and the AI Shortlist algorithm, but you still can explore its genotypes.
   {% endcolumn %}
   {% endcolumns %}


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/launching-analysis/creating_a_single_case/2.-family-tree/family_tree_legend.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
