DRAGEN QC report

The DRAGEN sample-level quality control (QC) report is generated by the Illumina DRAGEN Bio-IT Platform and covers the entire analysis workflow—from raw sequencing reads to variant calls.

DRAGEN QC report formats

Interactive HTML summary A visual summary that includes interactive plots of key quality metrics. This report can be accessed from the Sample quality section of the Lab tab.

CSV metric files A set of detailed CSV files containing sample-level quality metrics. These files are downloadable and support in-depth review and documentation.

Prerequisites for accessing the DRAGEN QC report

To view the DRAGEN QC report within an Emedgene case, one of the following workflows must be used:

A. FASTQ case

Run a FASTQ case in Emedgene. Since the DRAGEN analysis is integrated into Emedgene secondary analysis pipeline, QC reports are automatically generated.

B. Bring your own DRAGEN (BYOD)

Run the DRAGEN analysis externally. Then upload a VCF case to Emedgene, along with the QC report metrics files. This workflow is supported for batch case upload via UI and CLI and API-based case creation. Files must be prepared as described here.