> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/tertiary-analysis-pipeline/annotations-from-organization-databases.md).

# Annotations from organization databases

Annotations from organization databases appear in various parts of the platform, each showing certain details.

### Historic and noise databases

#### Variant table

* Allele frequency—in "\[Organization DB] AF (%)" column
* Allele count—in "\[Organization DB] AF (#)" column

#### Variant page

* **Summary tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Population summary card**
  * Allele count—in "Allele count" field
  * Hom/Hemi count—in "Hom/Hemi count" field
  * The last 10 samples—in "Last 10 samples" field
* **Population statistics tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Organization DBs**
  * Allele frequency—in "Allele frequency" column
  * Allele count—in "Allele count" column
  * Hom/Hemi count—in "# of Homozygotes" column
  * Allele number—in "Total" column
* **Visualization tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Population data**\
  "\[Organization DB]" tracks display variants from organization databases. Left-click a variant in a track to review variant details:
  * Allele frequency
  * Allele count
  * Allele number
  * Het count
  * Hom/Hemi count
  * The last 10 samples

### Curated databases

#### Variant table

* Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB—"Known variants" column

#### Variant page

* **Summary tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Clinical significance card**\
  Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB
* **Clinical significance tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Clinical significance card**\
  Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB


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