# Annotations from organization databases

Annotations from organization databases appear in various parts of the platform, each showing certain details.

### Historic and noise databases

#### Variant table

* Allele frequency—in "\[Organization DB] AF (%)" column
* Allele count—in "\[Organization DB] AF (#)" column

#### Variant page

* **Summary tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Population summary card**
  * Allele count—in "Allele count" field
  * Hom/Hemi count—in "Hom/Hemi count" field
  * The last 10 samples—in "Last 10 samples" field
* **Population statistics tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Organization DBs**
  * Allele frequency—in "Allele frequency" column
  * Allele count—in "Allele count" column
  * Hom/Hemi count—in "# of Homozygotes" column
  * Allele number—in "Total" column
* **Visualization tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Population data**\
  "\[Organization DB]" tracks display variants from organization databases. Left-click a variant in a track to review variant details:
  * Allele frequency
  * Allele count
  * Allele number
  * Het count
  * Hom/Hemi count
  * The last 10 samples

### Curated databases

#### Variant table

* Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB—"Known variants" column

#### Variant page

* **Summary tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Clinical significance card**\
  Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB
* **Clinical significance tab** <i class="fa-arrow-right-long">:arrow-right-long:</i> **Clinical significance card**\
  Color-coded "\[Organization DB]" badge based on **pathogenicity** in the Curated DB


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/tertiary-analysis-pipeline/annotations-from-organization-databases.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
