> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization.md).

# Variant visualization

- [Variant visualization tool](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool.md)
- [Track Manager (v100.40.0+)](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/track-manager-v100.40.0+.md)
- [Track Manager (v100.39.0 and older)](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/viewing-modes.md)
- [Visualization tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks.md)
- [Default tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks/default-tracks.md)
- [Curated data tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks/curated-data-tracks.md)
- [Knowledge base tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks/knowledge-base-tracks.md)
- [Population data tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks/population-data-tracks.md)
- [Additional tracks](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visualization-tracks/additional-tracks.md): Optional alignment, signal, and structural tracks in the variant visualization tool.
- [Visual aids](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/visual-aids.md)
- [Open the visualization tool in a popup window (v100.40.0+)](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/open-the-visualization-tool-in-a-popup-window-v100.40.0+.md)
- [Manually add variant from IGV](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant-visualization-tool/manually-add-variant-from-igv.md)
- [Variant visualization setup](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant_visualization_setup.md)
- [Enabling visualization for a VCF case](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant_visualization_setup/enabling_visualization_for_a_vcf_case.md)
- [Integration between Emedgene and desktop IGV](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant_visualization_setup/integration_between_emedgene_and_desktop_igv.md)
- [Loading alignment files to your desktop IGV](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant-visualization/variant_visualization_setup/loading_alignment_files_to_your_desktop_igv_-320+.md)


---

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