Variant visualization tool
The Variant visualization tool in Emedgene is based on the Integrative Genomics Viewer (IGV). It provides a high-resolution, interactive genomic view for variant interpretation.
A customizable, IGV-based viewer enables visual review of alignment and annotation data for validating and interpreting variant calls.
The viewer is embedded in the Visualization tab of the Variant page and is accessible from the Analysis tools tab in New mode (v100.39.0+).
Popup visualization window (v100.40.0+)
In v100.40.0+, you can open the variant visualization tool in a separate window to support flexible review, including multi-monitor workflows.
To open the visualization tool in a new window, select Open in popup in the top navigation panel. The visualization is moved from the original page into the popup window, and the embedded visualization is hidden.
Navigating between variants continues to update the visualization in real time.
Closing the popup returns the visualization to the original page.
Use the tool to review sequencing alignments, population data, functional predictions, curated annotations, and other supporting evidence in genomic context.
The visualization tool supports SNVs, indels, CNVs, STRs, and variants called with DRAGEN MRJD caller or DRAGEN Targeted caller.
v100.40.0+
In v100.40.0 and newer:
The Variant visualization tool is accessible from the Visualization tab on the Variant page and from the Analysis tools tab in New mode.
The improved Track Manager lets you control which tracks are displayed and their order, and reset your view to your organization defaults.
More visualization tracks are available.
You can open the Variant visualization tool in a popup window.
v100.39.0 and older
In v100.39.0:
The Variant visualization tool is accessible from the Visualization tab on the Variant page and from the Analysis tools tab in New mode.
In v100.39.0 and older:
Track Manager lets you control which tracks are displayed, individually and by category.
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