> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page.md). # Reviewing a variant - [Variant page](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/variant_page.md) - [Variant page top bar](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/variant_page_top_bar.md) - [Variant tagging widget](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/variant_tagging_widget.md) - [Multiple tags](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/variant_tagging_widget/multiple-tags.md) - [Curate actions in Analyze](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/curate-actions-in-analyze.md) - [Export to Curate](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/curate-actions-in-analyze/export-to-curate.md) - [Update in Curate (v38.0+)](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/curate-actions-in-analyze/update-in-curate-v38.0+.md) - [Open in Curate](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/curate-actions-in-analyze/open-in-curate.md) - [Summary tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/summary_section.md) - [Clinical significance tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section.md) - [Variant info](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/variant-info.md) - [Transcript](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/variant-info/transcript.md) - [Resources](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/variant-info/resources.md) - [In silico predictions](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/in-silico-predictions.md) - [Gene metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/gene-metrics.md) - [Clinical significance](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/clinical-significance.md) - [Gene-related diseases](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/clinical_significance_section/gene-related-diseases.md) - [Quality tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section.md) - [Variant quality summary](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/variant-quality-summary.md): Understand the overall quality signal shown for a variant across samples. - [Quality metrics per variant type](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type.md) - [SNV, MNV, and indel quality metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type/snv-mnv-and-indel-quality-metrics.md) - [CNV quality metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type/cnv-quality-metrics.md) - [SV quality metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type/sv-quality-metrics.md) - [STR quality metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type/str-quality-metrics.md) - [Haplotype variant quality metrics](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/quality-metrics-per-variant-type/haplotype-variant-quality-metrics.md) - [Allele distribution](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/quality_section/allele-distribution.md): Review how sequencing reads support reference and alternate alleles. - [Visualization tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/visualization_section.md) - [Population statistics tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/population_statistics_section.md) - [Connected variants tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/connected-variants-tab.md) - [Related cases tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section.md) - [Network data view controls](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section/network-data-view-controls.md) - [Pathogenicity trend bar](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section/pathogenicity-trend-bar.md) - [Related cases table](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section/related-cases-table.md) - [CNV overlap percentage filter](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section/cnv_overlap_percentage.md) - [One-way CNV annotation overlap](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/related_cases_section/cnv_overlap_percentage/one-way-cnv-annotation-overlap.md) - [Evidence tab](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/evidence_section.md) - [ACMG SNV Classification wizard](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/evidence_section/acmg_snv_classification_wizard.md) - [Logic behind ACMG classification of SNVs](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/evidence_section/logic_behind_acmg_classification_of_snvs.md) - [ACMG SNV criteria evaluation](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/evidence_section/acmg-snv-criteria-evaluation.md) - [ACMG CNV Classification wizard](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/evidence_section/acmg_cnv_classification_wizard.md) - [Variant page sidebar](https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/variant_page/variant_page_sidebar_-229+.md) --- # Agent Instructions This documentation is published with GitBook. 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