STR quality metrics
Last updated
Was this helpful?
The following metrics are calculated for STR variants.
The FILTER value in the VCF, indicating whether a variant passed caller thresholds or failed specific checks.
Requires DRAGEN 4.3+.
Coverage at the repeat locus.
Count of repeat units.
Base-pair length of the repeat tract.
Confidence intervals for the REF and ALT alleles, showing repeat-size accuracy.
Requires DRAGEN 4.3+.
STR loci in the ARX and HOXA13 genes are always marked Low quality.
Last updated
Was this helpful?
Was this helpful?
