Enabling visualization for a VCF case

Visualization is immediately accessible for cases that have been analyzed from FASTQ or BAM files. If the analysis was performed from VCF files, mapping visualization can be enabled using local BAM files.

In a VCF case, read alignment view can be enabled in two ways:

a. Creating a case via API with location of alignment files* defined in JSON;

b. Loading local alignment files* to your case in Emedgene.

Click on the button in the top right corner of the section and select relevant BAM and BAI files stored on your PC. After that, you will be able to select the samples to be shown in the viewer by selecting the corresponding sample names on top of the section.

• BAM and BAI (or CRAM and CRAI)