> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/emedgene/emedgene-curate-manual/curate_genes_2_28/curate_gene_page/transcript-card.md).

# Transcript card

## **Card contents**

The **Transcript card** on the [**Curate Gene page**](/emedgene/emedgene-curate-manual/curate_genes_2_28/curate_gene_page.md) shows:

* **Canonical transcript** and its exon count. Indicated by a checkmark symbol (<i class="fa-circle-check">:circle-check:</i>)
* **Organization preferred reference transcript** and its exon count. Indicated by a star symbol (<i class="fa-circle-star">:circle-star:</i>)
* A **Copy** button to copy transcript ID

During tertiary analysis in Emedgene, the reference transcript selected in **Curate** takes priority. It determines the `main_effect` and `main_gene` for each variant in that gene.

## How to update a gene's reference transcript

<div align="left"><img src="https://1131024994-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGCW0DnLlE7QjoZPNmKIi%2Fuploads%2Fgit-blob-58770049de2469ec3d52e4e7e67c6b518507fdf2%2Fcurate_gene_page_5_v32%2Bcurate%2Bgenes%2Btranscript.gif?alt=media" alt="Updating a gene&#x27;s reference transcript in Transcript card." width="425"></div>

Use the dropdown menu to select or change the reference transcript.

{% stepper %}
{% step %}
Open the reference transcript dropdown in the **Transcript card**.
{% endstep %}

{% step %}
Select the reference transcript you want to apply.
{% endstep %}
{% endstepper %}

**Result:** The reference transcript is updated for the gene and used in future case annotations.


---

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