Network summary card

Card contents

The Network summary card on the Curate Variant page shows related variant curations shared by collaborator organizations in your Network.

For small variants, the card shows occurrences of the same variant. For copy number variants, the card shows overlapping variants.

A variant may be displayed in Curate variant table based on network data before it has been added to your own Curate database (network-only variant). For network-only variants, the Network summary card is the only card shown on the variant page. Use Import to add the variant to your Curate database.

Small variants

Network summary card for a small variant.

For small variants, the Network summary card features:

• Collaborator (organization name)
• Variant pathogenicity
• Case creation date
• Transcript
• Gene-related disease
• Variant interpretation, shown when you expand a row
• Import option (for network-only variants)

CNVs

Network summary card for a copy number variant.

For copy number variants, the table shows all overlapping variants. By default, the annotation overlap range is set to 70–100%, and you can adjust it with the filter.

For copy number variants, the Network summary card features:

• Collaborator (organization name)
• Variant details: genomic coordinates and size
• Annotation overlap percentage
• Variant pathogenicity
• Case creation date
• Gene-related disease
• Variant interpretation, shown when you expand a row
• Import option (for network-only variants)

How to import a network-only variant

You can add a network-only variant to your Curate database. If the variant already exists in your Curate database, import is not available.

You cannot import a variant if it does not have pathogenicity.

To add a network-only variant to your Curate database, select Import in the corresponding row.

Result:

• The variant is added to your Curate database.
• The import activity is logged in the Activities panel.

After import, you can review and update the local curation as needed.